Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00606 ATGGAGAGAAAGGGGATTGATTTGAATAGAGAAACAAGTGGTGTGAATAATGATAAGATTGGTGATGGTTTTGTTGATAGAAGTAAAGTAAGGATTTTGTTTTGTGATACTGATTCAGATAGTTCTCAAGAGGTTGTTACACTTCTCTTGAGATGTTGTTATCAGGTTATTTCAGTGAAGTCAGCAAGACAGGTAATTGATGCACTGAATGCAGAGAGTGAAAATATAGATCTCATACTAGCTGAAGTTGGCCTTCCGAAGAAGAAGGGTATGAAGATGCTGAAATACATAGCCCGAGACAAGGAATTGCGCAGAATTCCTGTTATAATGATATCCGCACAAGATGAGGCATCTGTTGTTGTCAAGTGCTTGAAACTTGGAGCAGCGGACTATCTAGTAAAGCCTTTACGCACAAATGAGCTATTAAATTTGTGGACACACATGTGGAGAAGAAGACGCATGCTTGGGCTTGTAGAGAAGAACATGTTAAATTATGAATTTGACCTGGTAGCATCAGAGCCTAGTGATGCCAATACAACTAGTACCACTTTGTTCTCTGATGACACCGATGATAGGTCCAAAAGAAGCACCATTCCAGAGGCAGGAACGTCATCTCAACAAGAGCATGAGTCTACTATTGCAAATGCCGCTGCTGTTGAGGAAGCTCCAGATGACCATGCTTCTGAATGTCAGCCTGATGCCCATGGAATAAATGATCAGAGGACGGAACATTTTTCATCTGGTCTAAAGAAGAGTGAACTAAGGATCGGGATTGGGGAGTCATCAGCCTTCTTCACATATGTTAAAGCATCAATGCTAAAGAGAAACATTGAAGGGATCATTCATGTTGACAACAATCCTGCTGAACATGTGATGGAAGTTATGCATCAACAAGGGGTTAATGACCTTGAATTACGTGAAAATGGAGAGATGTGTGACAGTCAATCGCAAGATGACTTCCCCGGCAGCAATAGTATACCTGATTTTTTATCTATTGAGAGATCTTGTACTCCACCTTCATCTATGGAAGCTTCACATCAAAACGGTTACAGGGAAGAAAATTTGAATCACAACCGTCTGAGACATCCAAGAAACGGAACAACTTGTTCCGAGCTTGAAATGTCAAACATGGTCGCACGGCATGCTTATCCATATTATATGCCGGGAGTTGTTAATCATGTTATGATGCCTTCAGTGGCACAAATACATCAAAACAATGACCTGCAGAATCATGCTGTGGCATCTATGATTGCCCAGTACAATCATGTTCCACAAGGCAGTCCTCATGCCACTGGTATGATGTCTTACCCATATTACCCGATGAGTATGTGCTTACAACCTGGTCAGATTTCTACACCTAATTTATGGCCAACCTTTGGAGGCTCAAATCCATCTGAAGCAAATATAAGTAAAGTTGATAGGAGAGAAGCAGCGTTGATTAAATTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAACCGAAAACAACTTGCTGAAAGACGGCCTCGTGTGAGGGGGCAGTTTGTCAGAAAGTTGAATGGTGCTAATGTGGATCTTAATGGACAGCCTCCTTCCATTGAATTTGATGAAGATGATCAAGAAGATGGACAGCCTCCTCCCAGGGATGGTTGA 1650 0.4145 MERKGIDLNRETSGVNNDKIGDGFVDRSKVRILFCDTDSDSSQEVVTLLLRCCYQVISVKSARQVIDALNAESENIDLILAEVGLPKKKGMKMLKYIARDKELRRIPVIMISAQDEASVVVKCLKLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNMLNYEFDLVASEPSDANTTSTTLFSDDTDDRSKRSTIPEAGTSSQQEHESTIANAAAVEEAPDDHASECQPDAHGINDQRTEHFSSGLKKSELRIGIGESSAFFTYVKASMLKRNIEGIIHVDNNPAEHVMEVMHQQGVNDLELRENGEMCDSQSQDDFPGSNSIPDFLSIERSCTPPSSMEASHQNGYREENLNHNRLRHPRNGTTCSELEMSNMVARHAYPYYMPGVVNHVMMPSVAQIHQNNDLQNHAVASMIAQYNHVPQGSPHATGMMSYPYYPMSMCLQPGQISTPNLWPTFGGSNPSEANISKVDRREAALIKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGANVDLNGQPPSIEFDEDDQEDGQPPPRDG 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00606 549 ProSiteProfiles Response regulatory domain profile. 31 149 IPR001789 GO:0000160
Vifa2g00606 549 Pfam Response regulator receiver domain 32 143 IPR001789 GO:0000160
Vifa2g00606 549 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 321 IPR045279 GO:0009736
Vifa2g00606 549 SMART REC_2 30 145 IPR001789 GO:0000160
Vifa2g00606 549 Gene3D - 30 255 - -
Vifa2g00606 549 MobiDBLite consensus disorder prediction 175 244 - -
Vifa2g00606 549 MobiDBLite consensus disorder prediction 222 244 - -
Vifa2g00606 549 ProSiteProfiles CCT domain profile. 475 517 IPR010402 GO:0005515
Vifa2g00606 549 SUPERFAMILY CheY-like 28 156 IPR011006 -
Vifa2g00606 549 Pfam CCT motif 475 517 IPR010402 GO:0005515
Vifa2g00606 549 MobiDBLite consensus disorder prediction 518 549 - -
Vifa2g00606 549 MobiDBLite consensus disorder prediction 198 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00606 Vifa-Chr2 132239461 132244645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00606 6 536 Response Regulator Gene Family AT5G61380 48.475 2.23e-170 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vifa2g00606 Response_reg 1.9e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00606 K12127 - gmx:100271889 775.778