Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00597 ATGGCAAATGGACCAGAAGGATTGGAATGGGACGCATTTCATTATGTTTACGAGCTTGTACAAAAGGGAAATCTGGCCTTTCGAGAGAAGAGAATGGAAGAGGCAATCAGCTTTTACTCAAGAGCCTATAACATCAAATCTAGTGATCCAATCATCCTCAGCAATCGAAGTGTGGCTTATATTAGGATTAGCCAATATTTAATGCATAGATCATCATCATTCTCAGAACAAAGGCCATTGAGTGGGCTTGATCCCACAACACTTGCCGAACTGGGTTTGAAGGACGCTGCAAGGCTTATTGACCTCCAGCGTAATTCAGTAAAAGCATACCTTTTGAAGGCCAATGCTCTTATTCTATTAGAGAAATATGATGTGGCTCGGGATGTTATTCTTTCAGGACTTCAAGTTGATCCTTTTAGTAATTCCCTTCGGGAGTGTCTTCAAATAGTGGAAAGAGTATCATCTAATTCAACAGGGAGGAGTTCTCATGTACAACCCGATCGCAATGATGATTTTGATTGCACTCTCTGCCTGAAGTTGCTGTATGAGCCTGTCACAACCCCCTGTGGTCATTCTTTTTGCCGTTCATGTTTATTTCAATCAATGGATCGTGGGAACAGATGCCCATTGTGCAGGACAGTTCTCCTTCTTAACCCCAGAACATGTTCAGTTAGTGTGACATTGAAGAACATCATACAAAAAAACTTTGCAGAGGAATATGCTGAAAGGAAACAAGAACATGACAGTTTAGTCAACATTGGTGTAGATATGCTCCCTCTTTTTGTCATGGATGTTGTCTTACCATGTCAAAGGTTTCCACTAAATATATTTGAACCTCGTTATAGACTTATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTATAATAGATTCTTCAACAGGTTCATTGGCAGAGTTTGGTTGTGAAGTGGAAATCACAGAGTGTGAGCCACTTCCAGATGGTCGATTTTATATAGAGATTGAAGGTCGTAGGAGATTTCGCAACCTTCGTTCTTGGGATCAAGATGGGTATCGTGTTGCAGAAGTTGAATGGATACATGATATTATGCCCCCAGAAGGGACAAATGAAAGAGAGGATTTACAGGAATTGATAGATAATGCAGCAGCAAGTGCTCGATCATGGATAGGAAGAGCTAAAGAAGCAGCAAGACATGATCAAAGAAGATTAGAGAAATTCGTGAATGTTGAAGGAATGATACCCTCATTAAGAGACCCGGAGCGCTTTAGTTTTTGGTTGGCTACCCTCTCCAATCGGAGGCCTTCAGAAAGATTGGAACTCCTACGCATTAGAGATACCAAAGAGAGAATTAGGCGAGGCCTGATATTTCTTCAAGCTGAGGAACAAGGCTGCAGAATTCAGTAA 1395 0.4122 MANGPEGLEWDAFHYVYELVQKGNLAFREKRMEEAISFYSRAYNIKSSDPIILSNRSVAYIRISQYLMHRSSSFSEQRPLSGLDPTTLAELGLKDAARLIDLQRNSVKAYLLKANALILLEKYDVARDVILSGLQVDPFSNSLRECLQIVERVSSNSTGRSSHVQPDRNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLLLNPRTCSVSVTLKNIIQKNFAEEYAERKQEHDSLVNIGVDMLPLFVMDVVLPCQRFPLNIFEPRYRLMVRRIMEGNHRMGMVIIDSSTGSLAEFGCEVEITECEPLPDGRFYIEIEGRRRFRNLRSWDQDGYRVAEVEWIHDIMPPEGTNEREDLQELIDNAAASARSWIGRAKEAARHDQRRLEKFVNVEGMIPSLRDPERFSFWLATLSNRRPSERLELLRIRDTKERIRRGLIFLQAEEQGCRIQ 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00597 464 ProSiteProfiles Zinc finger RING-type profile. 174 212 IPR001841 -
Vifa2g00597 464 SMART tpr_5 16 49 IPR019734 GO:0005515
Vifa2g00597 464 SMART tpr_5 107 140 IPR019734 GO:0005515
Vifa2g00597 464 ProSiteProfiles Lon N-terminal domain profile. 255 456 IPR003111 -
Vifa2g00597 464 SMART lon_5 257 456 IPR003111 -
Vifa2g00597 464 Pfam ATP-dependent protease La (LON) substrate-binding domain 258 455 IPR003111 -
Vifa2g00597 464 SUPERFAMILY RING/U-box 167 236 - -
Vifa2g00597 464 SMART ring_2 174 211 IPR001841 -
Vifa2g00597 464 Gene3D - 390 456 - -
Vifa2g00597 464 SUPERFAMILY PUA domain-like 258 454 IPR015947 -
Vifa2g00597 464 ProSitePatterns Zinc finger RING-type signature. 189 198 IPR017907 -
Vifa2g00597 464 Gene3D - 256 358 IPR046336 -
Vifa2g00597 464 Pfam Zinc finger, C3HC4 type (RING finger) 174 211 - -
Vifa2g00597 464 Gene3D Tetratricopeptide repeat domain 15 152 IPR011990 GO:0005515
Vifa2g00597 464 PANTHER RING FINGER PROTEIN 127 10 457 - -
Vifa2g00597 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 253 IPR013083 -
Vifa2g00597 464 CDD RING-HC_LONFs_rpt2 171 215 - -
Vifa2g00597 464 SUPERFAMILY TPR-like 15 149 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00597 Vifa-Chr2 130233084 130240354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00597 165 215 C3H Transcription Factor Family AT1G74990 37.037 7.87e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00597 - - lja:Lj0g3v0312049.1 771.926