Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00590 ATGTCCTTTGTGAGACCTGTTTTCTTGCATGGCTTATCTGGTTTCTTTCATTTAGTGTTGTTAGCATTACTTTTACTGTCATGGTTGTGGAAGAAACTCACTATTGAATCCACACACAATTCCAGAGAGAGAATCAAAAACACCTTCGTCACAAAGACTATTTTTTTCTGCTCTCTTTCTGTTTCTGCTTTCAATATTTTTCTATGTTCTTCTGATTACTTGAGTTGGTCTAGAAATGGTTTTTCAAAAGAAAAGCTTGTGACCCTTTTGGATTTGGCGCTCAATACAGTTACTTGGTGTGTTATTTGTGTTTGTCTTCACAGAAAACTCTTGTGTCCAATGCCATTGTTCTTTGGAGCTTGGTGTACCATTTACCTTTTTGTTTCATGTTATTGCTTTACAGTGGACATTGTCCTCTATGAAAAGCAAGCTCCTTTGCCAATTCAGTACTTGGTTTCTGATGTTTTCTCTCTTTGTGTGGGTTTGTTCATTTGTTACTTGTGTTTTTTGAAGAAAAATGAGGGTGGAATAGAAGATACTACCACTCTTCAACAACCTCTTTTCAATGGTGATACAGAAGAAATAACCAAAGGGGACGAAACTGTTACTCCTTACTCTAATGCTGGTACTTTCAGCATTCTCACTTTCTCTTGGGTCTCTCCATTGATTGCTATTGGAAAGAAGAAAACTCTAGATCTTGAGGATGTTCCTCAACTTGACATAAGAGACAGTTTATTTGAAGCATTTCCATATTTCAAAGATAACCTTGATGCATACTGTGTTGATAACAACAATAGAGTGACCACATTCAAGCTAGTGAAGTCATTAGCCTTCTCAGCATGGAAAGAGATTCTTTTGACAGCTATTTTTGCATTGGTAAATACATTTGCTTCATATGTAGGTCCCTATCTTATAGATAATTTTGTTCAATATCTTAATGGACAAAGAAATTTTGAATATGAGGGACTAGTTTTGGTGTCTACATTTTTTGTGGCAAAGCTTGTGGAGTGCCTGACAAAAAGGCAATGGATTTTCAGGCTACAGCGGGTTGGAATTAGAATCCAAGCACTGCTTGTAACAATCATCTATAACAAAACTTTGACACTTTCCAGTCAATCCAAACAAGGCCACACTAGCGGCGAGATAATCAATTTCATGACGGTTGATGCCGAAAGAGTCGGCGACTTCAGTTATCACCTGCATGATCTGTGGTTGGTGGTTCTACAAGTTTTAGTAGCTTTGTTGGTATTGTATAAAAACCTTGGCATTGCTTCGATTTCCGGGTTTGTTGCAATTATGATTGTAATGTTGGCAAATGTTCCTCTGGGGTCAATCCAAGAGAAGTTTCAAGACAAGTTGATGATGTCAAGAGATAAGAGAATGAAGGCGACATCTGAGATTTTAAGGAACATGAGGATTCTCAAACTTCAAGGATGGGAAATGAAGTTTCTTTCTAAGATAACTGAGCTCAGAAAGACTGAACAAGATTCATTAAACAAGTTTTTATACACTATAGCTTTGATCATTTTTGTATTTTGGAGTGCACCAGCATTTGTTTCTGCGGTTACTTTTAGTACTTGTATGGTTATAGGGGTGGCACTTGAATCAGGGAAGATCTTGTCTTCACTTGCAACTTTCCAGATCCTCCAAGAACCTATTTATAATCTTCCAGAAACAGTTTCAATGATGGCACAATGTAAGGTTTCTCTTGGCAGGATTGCATCTTTTCTTTGTCAGGACGACATAAAGTCAGATATTGTTGAGAATCTTCCAAAGGATAGTAATAGTTCCGATTTAGCAATTGAAGTAGTTGATGGAAATTTCACCTGGGATTTGTCTTCCTCAAATGCAGTATTGAAAAATATAAATCTTAAAGTTTTTCATGGAATGAAAGTTGCTATTTGTGGTAGTGTTGGATCAGGAAAGTCTAGTTTACTTTCATGTATATTAGGGGAAGTTCCAAAGATGTCAGGGATCTTGAAGGTTTGTGGGACAAAGGCTTATGTATCTCAATCACCATGGATACAAAGTAGCAAGATAGAGGATAATATACTGTTTGGGAAGGATATGAAAAGGGAAAGATATGAGAAGGTCCTTGAAGCATGTTGCCTAAAGAAGGATCTAGAGATTTTGTCATTTGGAGATCAAACAATCATTGGGGAGAAGGGAATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCTCGTGCTCTATACCAAGATTCTGATATATATCTATTTGATGATCCTTTTAGTGCTTTGGATGCTCATACAGGATCTCATCTATTTAAGGAATGCTTGTTGGGATTTTTAAGTTCAAAGACAGTGATTTATGTCACACATCAAGTAGAGTTCTTACCTGCTGCTGACCTTATTTTGGTTGTGAAAGATGGAGAAATTACTGAATGTGGAAAGTATAACGATCTACTCAACTCAGGCACTGATTTTATGGAACTTGTTGGTGCTCATAGAGAAGCTTTGTCTGTACTAGACTCATCAAATGGAGATGCAAATACAACAGAATCTGATAAAATACAAGAGAAGAAAGAAGTGCAAAATGGGGGAACTGATGAAATGTTTGAGCCCAAAAGCCAAGGCCAACTTGTTCAAGAAGAAGAAAGAGTGAAAGGTAAAGTTGGATTTTCGGTGTATTGGAAATATATCACCCTAGCATATGGAGGGGCTCTTGTTCCACTCATATTGATAGCTGAGATTTTGTTTCAACTTCTTCAAATCGGAAGCAACTATTGGATGGCTTCAGCAACTTCAATCTCAAAAGATGTTGATCCACCTGTTGGAGGAAGTACACTCCTAATTGTCTATGTTGGTTTGGCCATAGGAAGTTGTTTTTGTGTCCTAGCTAGAGCAACACTCGTTGTCACAGCCGGTTATAAGGCAGCTACTCTACTCTTCAACAAAATGCATCTTTGCATTTTCCATGCTCCAATGTCATTTTTTGATGCCACTCCTAGTGGAAGAATCCTTAATAGGGCTTCTACCGACCAAAGTGCAGTGGATATGAACATTCCTTTTCAAGTTGCACTAGTTGCTTGCTCTATGATCCATCTCCTTGGAATTATATGGGTCATGTCACAGGTTGCATGGCAGGTTTTCATTGTCTTTATTCCTTTGACAGTAATCAGCATATGCTATCAGAAATATTATATTCCATCAGGCCGGGAACTATCTCGTTTAGTCGGAGTATGCAAAGCTCCTGTCATTCAGCACTTTGCTGAAACAATTTCAGTTCAATATTTCCGGTGCTATGGAATGGTTGTGTTTTCGCTTAGATATCTTGTCATCTGTCACATTTGCCTTCTGCTTGTTATTCTTGATATTTTCTCCACAAGGAATCATAAATTCAAGTCTTGCTGTGAGCCTCCTCTTGTTGTAGAGGAAAATCGACCACACGCTTCTTGGCCATTATATGGCACAATTGATATTCACAACTTGCAGGTGCAATATGCTCCGCATATGCCACTTGTTTTACGCGGCCTTACATGCACATTCGTTGGAGGACTGAAAACCGGAATCGTTGGGAGAACAGGAAGTGGTAAATCAACTCTGATACAAGCACTTTTCAGAATTATAGAGCCTATTGTTGGAAGAATTTTGATTGATGGTATCGACATATCTTCCATTGGACTACATGATTTGAGGTCGAGATTGAGCATTATTCCTCAAGATCCAACCATGTTTGAAGGTACTGTCAGGAGTAACTTGGATGCACTGGAAGAGTACACAGATGAACAAATTTGGGAGGCACTAGATATGTGTCAACTTGGAGATGAAGTTAGAAAGAAAGAAGGAAAGTTAGACTCATCAGTGAGTGAGAATGGTGAGAATTGGAGTATGGGTCAAAGACAGTTGGTTTGTCTTGGTAGGGTGCTGCTTAAGAAGAGTAAAGTATTGGTACTAGATGAAGCTACTGCATCGGTTGACACGGCTACCGATAATTTGATACAGCAAACTCTTAAGCAACATTTTTCTGATTGCACAGTCATTACAATTGCACATAGAATAACTTCTGTTATTGACAGTGATATGGTTCTACTACTTAATCAAGGACTAATTGAGGAATATGATTCTCCAACAAGATTGCTAGAGAACAAGTTATCGCCTTTTGCTCAACTTGTTGCTGAGTATACCAGAAGGTCCAACTCCAATTTAAACCCACAAAATTAG 4191 0.3811 MSFVRPVFLHGLSGFFHLVLLALLLLSWLWKKLTIESTHNSRERIKNTFVTKTIFFCSLSVSAFNIFLCSSDYLSWSRNGFSKEKLVTLLDLALNTVTWCVICVCLHRKLLCPMPLFFGAWCTIYLFVSCYCFTVDIVLYEKQAPLPIQYLVSDVFSLCVGLFICYLCFLKKNEGGIEDTTTLQQPLFNGDTEEITKGDETVTPYSNAGTFSILTFSWVSPLIAIGKKKTLDLEDVPQLDIRDSLFEAFPYFKDNLDAYCVDNNNRVTTFKLVKSLAFSAWKEILLTAIFALVNTFASYVGPYLIDNFVQYLNGQRNFEYEGLVLVSTFFVAKLVECLTKRQWIFRLQRVGIRIQALLVTIIYNKTLTLSSQSKQGHTSGEIINFMTVDAERVGDFSYHLHDLWLVVLQVLVALLVLYKNLGIASISGFVAIMIVMLANVPLGSIQEKFQDKLMMSRDKRMKATSEILRNMRILKLQGWEMKFLSKITELRKTEQDSLNKFLYTIALIIFVFWSAPAFVSAVTFSTCMVIGVALESGKILSSLATFQILQEPIYNLPETVSMMAQCKVSLGRIASFLCQDDIKSDIVENLPKDSNSSDLAIEVVDGNFTWDLSSSNAVLKNINLKVFHGMKVAICGSVGSGKSSLLSCILGEVPKMSGILKVCGTKAYVSQSPWIQSSKIEDNILFGKDMKRERYEKVLEACCLKKDLEILSFGDQTIIGEKGINLSGGQKQRIQIARALYQDSDIYLFDDPFSALDAHTGSHLFKECLLGFLSSKTVIYVTHQVEFLPAADLILVVKDGEITECGKYNDLLNSGTDFMELVGAHREALSVLDSSNGDANTTESDKIQEKKEVQNGGTDEMFEPKSQGQLVQEEERVKGKVGFSVYWKYITLAYGGALVPLILIAEILFQLLQIGSNYWMASATSISKDVDPPVGGSTLLIVYVGLAIGSCFCVLARATLVVTAGYKAATLLFNKMHLCIFHAPMSFFDATPSGRILNRASTDQSAVDMNIPFQVALVACSMIHLLGIIWVMSQVAWQVFIVFIPLTVISICYQKYYIPSGRELSRLVGVCKAPVIQHFAETISVQYFRCYGMVVFSLRYLVICHICLLLVILDIFSTRNHKFKSCCEPPLVVEENRPHASWPLYGTIDIHNLQVQYAPHMPLVLRGLTCTFVGGLKTGIVGRTGSGKSTLIQALFRIIEPIVGRILIDGIDISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDALEEYTDEQIWEALDMCQLGDEVRKKEGKLDSSVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLKQHFSDCTVITIAHRITSVIDSDMVLLLNQGLIEEYDSPTRLLENKLSPFAQLVAEYTRRSNSNLNPQN 1396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00590 1396 SMART AAA_5 628 801 IPR003593 GO:0016887
Vifa2g00590 1396 SMART AAA_5 1174 1359 IPR003593 GO:0016887
Vifa2g00590 1396 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1150 1382 IPR003439 GO:0005524
Vifa2g00590 1396 Gene3D ABC transporter type 1, transmembrane domain 861 1090 IPR036640 GO:0005524|GO:0016020
Vifa2g00590 1396 Gene3D ABC transporter type 1, transmembrane domain 261 576 IPR036640 GO:0005524|GO:0016020
Vifa2g00590 1396 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 601 824 IPR003439 GO:0005524
Vifa2g00590 1396 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 285 565 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g00590 1396 FunFam ABC transporter C family member 3 1131 1383 - -
Vifa2g00590 1396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1137 1373 IPR027417 -
Vifa2g00590 1396 CDD ABCC_MRP_domain2 1146 1366 - -
Vifa2g00590 1396 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 205 1084 - -
Vifa2g00590 1396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 823 IPR027417 -
Vifa2g00590 1396 CDD ABC_6TM_ABCC_D2 899 1093 IPR044726 GO:0140359
Vifa2g00590 1396 ProSitePatterns ABC transporters family signature. 726 740 IPR017871 GO:0005524|GO:0016887
Vifa2g00590 1396 FunFam ABC transporter C family member 10 268 581 - -
Vifa2g00590 1396 SUPERFAMILY ABC transporter transmembrane region 886 1084 IPR036640 GO:0005524|GO:0016020
Vifa2g00590 1396 Gene3D - 577 848 IPR027417 -
Vifa2g00590 1396 Pfam ABC transporter transmembrane region 901 1084 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g00590 1396 Pfam ABC transporter transmembrane region 285 552 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g00590 1396 CDD ABC_6TM_ABCC_D1 286 573 IPR044746 GO:0140359
Vifa2g00590 1396 Gene3D - 1131 1384 IPR027417 -
Vifa2g00590 1396 FunFam ABC transporter C family member 5 584 833 - -
Vifa2g00590 1396 Pfam ABC transporter 1166 1313 IPR003439 GO:0005524
Vifa2g00590 1396 CDD ABCC_MRP_domain1 601 801 - -
Vifa2g00590 1396 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 901 1084 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa2g00590 1396 SUPERFAMILY ABC transporter transmembrane region 275 581 IPR036640 GO:0005524|GO:0016020
Vifa2g00590 1396 Pfam ABC transporter 619 753 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00590 Vifa-Chr2 127673411 127678568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00590 601 830 Calmodulin-binding Proteins AT2G36910 30.800 3.19e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00590 - K05666 dcr:108195806 1552.73