Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00585 ATGCAAAGTCAGGGAAGAAACACCACCGTCCAATGGCGCTGCTCCGAAGATTCCTCCACCGGAAGCCGCCACGCCGTCCTCCGGAGATCTCTGACAGAGGCGATTTGTAGTTGTCACACGGTTGCCATGGGTTGTGTGAAGTCGAAGGAAGTGAATGAAAGTAGAGTGACTGAGTTAGGGCGAACGAGTCCGAATGAGTTGCTGAGTCATAGCTTTGGGAAATTGGATAAGTCTGTTCAACGTCAACTCGAGGCGGTTGGTTGGCCGAAGTGGCTTGTTGCCGCGGCTGGTGAAGCTATTCGCGGTTGGATTCCATTATGTGAAGATAAGTTTCAGATGATGGAACAGATTGGAGAGGGTACATATAGCCAAGTATTTAAGGGGAGAGACCTTCAGACATGGAAATTAGTAGCACTGAAAAAGGTGAGGTTTAACAGTTTAGACCCGGAAAGTGTAAGGTTCGCGGCAAGGGAGATAATGATATTGAGAAAGCTTCATCATCCCAATATCATGAAGCTTCAAGGGTTGATTACTCCGAGATTATCTAGTACCTCCTTATACCTTGTGTTTGAGTACATGGAGCACGACTTTGCCGGGCTCTTGGGCAATCCCGAAGTCAATTTCACTCAACCACAGATAAAGTGCTTTATGAAGCAATTGTTATCTGCTGTTGAATATTGTCATTCACTTGGTGTGATGCACCGAGACATTAAAGGGGCAAATCTTCTTGTCAACAATGATGGAACGTTGAAAGTTGCCGATTTTGGATTGGCAAACCTCATTACATCGGAGCGGAAAAATACCCTCACTAATAATGTTGTCACATTATGGTATCGTCCACCGGAACTTTTACTTGGTTGGACAAATTATGGTTTTTCTGTGGATCTCTGGAGTGTTGGCTGCATCTTTGGAGAGCTACTCCTTAGGAAGGTTATATTTCCGGGGAAATCTAAGCATGACCAACTAAAGAAAATTTTCGAACTTTGTGGCAACCCATCTACTGAATTCTGGAATAGGACTAAACCTCCTTTTGACACTTTGAGGCCAAAACTACCTTGTGATGGTTGTTTCCAAGATTACTTTAAAGATCTGCCTCCAACCAGCGTAAATTTGCTACAAACTCTTCTCTCTATTGAACCTTACAAACGTGGGACTGCTGCATCTGCTCTCTCGTCTGAGTATTTCAAAACACCACCTTATGCTTGTGAACCATCAAGCTTGCCGAAATACCCAACTAGCAAGGAAATTCACGCAAAGCAAAGGGCGGAGGAGGAGTTAAGGAAAAAGAAGGATAGACAAGTTCGTCAAACTGAAGCAATGAAACAATCAAGAAAGCTGCTAGGATTCCCAGAGGATTCGGCATGTCAAACTCAGAATTCGCACAAGTTCCGTAGTAGATCTCTCCGAATCCTTAAAGAGAAGAGTAACCTCGGTGAGAAGGCATCTCAAGGAAACATGTTCTTTTCTGGCCCATTACAAGTTTCAACATCAAATGCATCTGCTTGGGTAAAAAGCCAAAAAGACAATACTTCACTTCGATCAGATTGTCGAACTACTTCTAGAGGACATAGTTCCAATGCCTTGGATTCTTCTGCATTAAACTCGAGAAATAAATTGGACACAGTAATTCAAGAAAATAAAGAGTTTTGCGGTAGAAACACCAAATCTAGAGGCCTTGAGCTACTTGAAATTTATAAGGCTTCAAAGGATAATCATTGGAGTGGGTTTGATCGTCTAAACTCATTTGATGCTTCTGATGAGTACCACTCGCGAGAATTGCCGACAGTGCTTTCTGAGGGAGAAGATCCTTTGTCCAAAAGAAGTAACTTGAGTTATCAGAATCAAAAAGGAAAAGTTGAATTTTCAGAATCACTAATACCATCATCATTTAAGAAAGATAAGAAGCACGTGACAGGAATATAG 1923 0.4254 MQSQGRNTTVQWRCSEDSSTGSRHAVLRRSLTEAICSCHTVAMGCVKSKEVNESRVTELGRTSPNELLSHSFGKLDKSVQRQLEAVGWPKWLVAAAGEAIRGWIPLCEDKFQMMEQIGEGTYSQVFKGRDLQTWKLVALKKVRFNSLDPESVRFAAREIMILRKLHHPNIMKLQGLITPRLSSTSLYLVFEYMEHDFAGLLGNPEVNFTQPQIKCFMKQLLSAVEYCHSLGVMHRDIKGANLLVNNDGTLKVADFGLANLITSERKNTLTNNVVTLWYRPPELLLGWTNYGFSVDLWSVGCIFGELLLRKVIFPGKSKHDQLKKIFELCGNPSTEFWNRTKPPFDTLRPKLPCDGCFQDYFKDLPPTSVNLLQTLLSIEPYKRGTAASALSSEYFKTPPYACEPSSLPKYPTSKEIHAKQRAEEELRKKKDRQVRQTEAMKQSRKLLGFPEDSACQTQNSHKFRSRSLRILKEKSNLGEKASQGNMFFSGPLQVSTSNASAWVKSQKDNTSLRSDCRTTSRGHSSNALDSSALNSRNKLDTVIQENKEFCGRNTKSRGLELLEIYKASKDNHWSGFDRLNSFDASDEYHSRELPTVLSEGEDPLSKRSNLSYQNQKGKVEFSESLIPSSFKKDKKHVTGI 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00585 640 FunFam CMGC/CDK/CRK7 protein kinase, variant 195 433 - -
Vifa2g00585 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Vifa2g00585 640 Coils Coil 419 439 - -
Vifa2g00585 640 SUPERFAMILY Protein kinase-like (PK-like) 105 400 IPR011009 -
Vifa2g00585 640 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Vifa2g00585 640 Pfam Protein kinase domain 112 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00585 640 Gene3D Phosphorylase Kinase; domain 1 98 194 - -
Vifa2g00585 640 SMART serkin_6 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00585 640 FunFam probable serine/threonine-protein kinase At1g54610 98 194 - -
Vifa2g00585 640 ProSiteProfiles Protein kinase domain profile. 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00585 640 Gene3D Transferase(Phosphotransferase) domain 1 195 436 - -
Vifa2g00585 640 CDD STKc_CDK9_like 111 395 - -
Vifa2g00585 640 MobiDBLite consensus disorder prediction 504 532 - -
Vifa2g00585 640 PANTHER CELL DIVISION PROTEIN KINASE 109 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00585 Vifa-Chr2 124334152 124342019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00585 109 446 Core Cell Cycle Gene Families AT5G10270 45.042 1.50e-100 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vifa2g00585 Pkinase 1.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00585 - - gmx:100796719 694.115