Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00569 ATGGAACTCACAGAAGAACAACTAAAACAAATCGAAGCGAATCGCTTAGCCGCATTAGCAAAACGCAAAGCTTTCTTAGAATCATCTTCACAACCTCAACGAAACCCTTGGCACCTTTTCAAATGCCAAAAACTCTCTCAACCCCAACCCCTTCAATCCAAACCCAAACCCCAACCCATTCAACCTAAACCTGATCCCGAACCCGTTATCAAATTCCTCGCACGACTCGAAGTTTGTTCTCCCGATTCCTTCACCATTACTCCCCTCCCTCTCCCCAATTTCCGTTTTCCAACCTTCGGTACTTGCTTCCAAATCCTCAACGACCTTCTCTCCCAAGTGGATGTGGATCCGTCGCAATTTACGCAGACGAGTGCGGGCGGGAAAGCGTGCGTGCTGAAATTATCGGGTTATCGGACTGTTTTGAAGCAGTTGAAGGCGGGGGTTGAGGTGGAGGAGATTCCTTGGAATACTTTTAATGTGGTTGAGAAACTTTCTCATTCGGTGGGGAGGTGGAATCCGGTGAGGCCGGAGCATTTGAGTGATGAGGAGGTTGATAATTTGATTAGGAAGTTGCCTAAGAGTTTAGTTGATGTGTTGTTGCCGTTTCAAATGGATGGTTTGAGGTTTGCGCTTAGAAGAGGCGGGCGATGTCTCATTGCGGATGAAATGGGACTTGGGAAGACATTGCAGGCTATTGCTATTGCGGGTTGTTTCATGGATGAAGGAGCTATACTTGTTGTTTGCCCTGCTGTTTTACGGTATTCATGGGCTGAAGAAATTGAGCGGTGGTTTCCTTCCTGCTTGCCTACAGATATTCATCTCGTTTTTGGCCACCAAGACAATCCTGTATATCTAACAAGATGCCCTAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGGAAGAGCATGCTTGGGCGTAAGTGGGCTCTTATGATTGTTGATGAATCTCATCATGTCCGTCCTTCAAAAAAAAGCTCAGAACCCGGAGAGATAAAGGCTGTTCTTGACGTGGCTACAGAAGTCAAGCGTATAATTCTGCTGTCAGGGACACCTTCTTTATCAAGACCGTTTGACATATTTCATCAGATAAATATGTTATGGCCTGGTTTGCTGGGGGTAACCAAATATGAGTTTGCAAAAACTTATTGTGACCTCAAATATTTCAAGGGTGTCCAAGGAAAATATTTTGCGGATTATTCAAAGGGCATTCGCTTGGAGGAGTTGAACGTGTTACTAAAGCAAACTGTTATGATAAGGCGCCTCAAGGAACAAGTGTTGCAACAGTTACCTCCAAAGCGCAGGCAAATTATAAGAATGTCGCTGAAGAGATCAGATATAGTTTCCGCGAAAACTGCAGTTGGGGTAATGAAAAATGATGACTCTGAAAATGCTAGTGAAGAAATGCCTTTGGAAAGTTTTGATGAACATGATGGGAAGCTTACTAATCAAGAACTTGGAATTGCAAAGCTATCTGGGTTTTGTGAATGGCTTTCCTTCCATCCACTCATTGCAGGATCAGATAATGCTCCAAAGATGATAATTTTTGCTCATCACCACAAAGTTCTTGACGGAGTACAGGAGTTTATATGTGAGAAAGGAGTGGGTTTTGTGCGAATAGATGGACTTACACTACCCAAAGATAGACAGTCTGCAGTAATCTCATTTCGATCATCACCGGAGGTTAAATTGCGATAA 1704 0.4366 MELTEEQLKQIEANRLAALAKRKAFLESSSQPQRNPWHLFKCQKLSQPQPLQSKPKPQPIQPKPDPEPVIKFLARLEVCSPDSFTITPLPLPNFRFPTFGTCFQILNDLLSQVDVDPSQFTQTSAGGKACVLKLSGYRTVLKQLKAGVEVEEIPWNTFNVVEKLSHSVGRWNPVRPEHLSDEEVDNLIRKLPKSLVDVLLPFQMDGLRFALRRGGRCLIADEMGLGKTLQAIAIAGCFMDEGAILVVCPAVLRYSWAEEIERWFPSCLPTDIHLVFGHQDNPVYLTRCPRVVVISYTMLHRLRKSMLGRKWALMIVDESHHVRPSKKSSEPGEIKAVLDVATEVKRIILLSGTPSLSRPFDIFHQINMLWPGLLGVTKYEFAKTYCDLKYFKGVQGKYFADYSKGIRLEELNVLLKQTVMIRRLKEQVLQQLPPKRRQIIRMSLKRSDIVSAKTAVGVMKNDDSENASEEMPLESFDEHDGKLTNQELGIAKLSGFCEWLSFHPLIAGSDNAPKMIIFAHHHKVLDGVQEFICEKGVGFVRIDGLTLPKDRQSAVISFRSSPEVKLR 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00569 567 FunFam SNF2 DNA repair protein, putative 172 422 - -
Vifa2g00569 567 Pfam SNF2-related domain 217 449 IPR000330 GO:0005524|GO:0140658
Vifa2g00569 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 423 IPR027417 -
Vifa2g00569 567 Coils Coil 1 21 - -
Vifa2g00569 567 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 372 IPR014001 -
Vifa2g00569 567 CDD DEXHc_HARP_SMARCAL1 199 423 - -
Vifa2g00569 567 SMART ultradead3 195 391 IPR014001 -
Vifa2g00569 567 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 566 - -
Vifa2g00569 567 Gene3D - 503 566 IPR027417 -
Vifa2g00569 567 Gene3D - 175 419 IPR038718 -
Vifa2g00569 567 MobiDBLite consensus disorder prediction 52 66 - -
Vifa2g00569 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 565 IPR027417 -
Vifa2g00569 567 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00569 Vifa-Chr2 117780254 117790621 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa2g00569 SNF2_N 5.1e-26 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00569 K25861 - gmx:100788690 809.675