Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00566 ATGTACCCTCAACCACACTACCAATCTCAACCCTTCAATTCACAGCAACAAGAACAAGAACAACAACCCTACTATTCCTTTTTCCCTCCCACTTCAGATTCTTCGCTTCATCCTCCCGGCACTAACCCAATTGCAAATTCAACACCTTTTTCTGCTCCCGCTTCTGGTTATCAGAATTGGCTCGCTCAACAACCTGAACCCGTCGGTTATGATCTTGGCAATGCTGTTGGTTCATCATACGAGACTTCTGCGCCTTCTGCGTGGAATGCTACATGGCCACAACAAATTTATGGCAATGAGACTACAACAATGTTGCCTAACCAACCCAAATTCACCCAAGCGTTGAGGTGTGAAGTGTGTAAAATAGATGTCAATAGCAAAGATTCATATGAAAAGCACGTAGCCGGAAAGAAACATCAGAAGAATTTGCAAAACGGTGCAAGTTGCATCCAAGTACAAGCGTTAATTGGTCCTGTAGTCAACCAATCAAAGGCTGAGAAACAGGTGGAACAGTCAAAGGTTTGCACAACTTGCAATGTTTTGTGCACTAGTCACGACACATATATCAAACATATTGCTGGGAAAAAGCACGCAGCTCAGGTTTGCTTGATGTCTAATGGCGGCATTGGTCCATCTATTGCCGAATTCAAGCGTATTGGAGTTCCCCCGTTTCAAAAAGCTGCTAAGAAAATCAAAGTTGCTCAATCGGCATGGTGCGAAACCTGTAAGATTAATTGTAACAGCAGAGATATGTACATTACACACTTGGCCGGAAAGAAACACTTGAAGAACTTGGAGAAACTGTCGAATCCGAAAATTGACGTTGGCACCAGTTCCACTGCCAATGCTTCAAATACTTTAATCGGACCACAGGAAAAGCCAGGTACCGATAATCCAAAAGCAAAGAAGGCATCGGAACTTGATATCGAGTCAAAGAAACGTAAAGTTGTGGAAGGAGGAGCAATGGTTAATAATATTAAAACGTGTACTTTATGCAATGTGGTGTGTAATAGCGAGACAGTTTTCAATTTGCACCTTGTTGGCCAGAAACATGCTGCTATGGTGAAGAAAGCAGGATCAAGCACTGGTTGA 1092 0.4286 MYPQPHYQSQPFNSQQQEQEQQPYYSFFPPTSDSSLHPPGTNPIANSTPFSAPASGYQNWLAQQPEPVGYDLGNAVGSSYETSAPSAWNATWPQQIYGNETTTMLPNQPKFTQALRCEVCKIDVNSKDSYEKHVAGKKHQKNLQNGASCIQVQALIGPVVNQSKAEKQVEQSKVCTTCNVLCTSHDTYIKHIAGKKHAAQVCLMSNGGIGPSIAEFKRIGVPPFQKAAKKIKVAQSAWCETCKINCNSRDMYITHLAGKKHLKNLEKLSNPKIDVGTSSTANASNTLIGPQEKPGTDNPKAKKASELDIESKKRKVVEGGAMVNNIKTCTLCNVVCNSETVFNLHLVGQKHAAMVKKAGSSTG 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00566 363 PANTHER ZINC FINGER RNA-BINDING PROTEIN 159 277 - -
Vifa2g00566 363 Gene3D Classic Zinc Finger 224 268 - -
Vifa2g00566 363 Gene3D Classic Zinc Finger 100 145 - -
Vifa2g00566 363 Gene3D Classic Zinc Finger 302 358 - -
Vifa2g00566 363 MobiDBLite consensus disorder prediction 273 292 - -
Vifa2g00566 363 Pfam Zinc-finger of C2H2 type 116 139 - -
Vifa2g00566 363 Pfam Zinc-finger of C2H2 type 328 351 - -
Vifa2g00566 363 Pfam Zinc-finger of C2H2 type 238 261 - -
Vifa2g00566 363 Pfam Zinc-finger of C2H2 type 174 197 - -
Vifa2g00566 363 Gene3D Classic Zinc Finger 159 208 - -
Vifa2g00566 363 SUPERFAMILY beta-beta-alpha zinc fingers 235 268 IPR036236 -
Vifa2g00566 363 MobiDBLite consensus disorder prediction 273 307 - -
Vifa2g00566 363 SUPERFAMILY beta-beta-alpha zinc fingers 162 201 IPR036236 -
Vifa2g00566 363 SUPERFAMILY beta-beta-alpha zinc fingers 93 144 IPR036236 -
Vifa2g00566 363 SMART ZnF_U1_5 170 204 IPR003604 GO:0003676|GO:0008270
Vifa2g00566 363 SMART ZnF_U1_5 112 146 IPR003604 GO:0003676|GO:0008270
Vifa2g00566 363 SMART ZnF_U1_5 234 268 IPR003604 GO:0003676|GO:0008270
Vifa2g00566 363 SMART ZnF_U1_5 324 358 IPR003604 GO:0003676|GO:0008270
Vifa2g00566 363 SMART c2h2final6 327 351 IPR013087 -
Vifa2g00566 363 SMART c2h2final6 237 261 IPR013087 -
Vifa2g00566 363 SMART c2h2final6 173 197 IPR013087 -
Vifa2g00566 363 SMART c2h2final6 115 139 IPR013087 -
Vifa2g00566 363 MobiDBLite consensus disorder prediction 1 50 - -
Vifa2g00566 363 SUPERFAMILY beta-beta-alpha zinc fingers 320 357 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00566 170 358 C2H2 Transcription Factor Family AT5G61190 28.571 1.09e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00566 - - cam:101495339 469.544