Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00565 ATGGAAGACGATCAAGAAGTGATTAAGCACGTTTGTAGAATCTGCTGCAAGAGTTTTCCATGTGGTAGATCATTAGGGGGTCACATGAGGTCACATGATCATGTGAAAACCAATGATCATCATCATGATATTGATGATGATGATGATGATGATGATGATGATGATGATGATGGTGATGATGAGAGTTTTGTTGTTGTTTCTGCTTCAACTACAGTGAAGAAAGAAGAAGGTTGTTCTGAAGGGTATTACGGTCTTAGAGAGAATCCAAAGAAAACTTGGAGAGTACTCAATGATTCAACTAGTGATGATCAAGAAGAGATTTTTGATGTTGTTTTGGACAAATTGTGCAAAGAATGTGGTAGAGGGTTTCAGTCTCGGAAAGCTTTATTCGGTCACATGAAGTGTCATTCGAATAGTAAGAACAATGGTTTTGAATTGGATGAACAAGAGTCTCATACTGATGCTGCTGCTGTTCTTCCGAGTAGAAAAAGAAGATCGAAAAGACGATTGAAAACAAGGTATGTAAATGGTAACAGCTGTTCTTCATCTGTTGTGAATTTTGCTGCGAATTCAGTTTCTGAGAAAGAGGAGCATGAACAAGAAGAGGTTGCTATGAGTTTGATGATGCTTAGTAGAGATGTAAGATCTTGGTGTGGTCTCAATTCTATTGCTGAATCTTCTGATAATGATGATAATAAATTGAAAAGCTTAGAAATTTTTGATGATGAGAGTAAAGGAAATGATGGATTGAAGATGAAGAAAACTAGAAATTCTGTTATTGAGAATGGAAAGGATAAGAAGAAGAATAAGAATAAGGTGAAGATTGAGGTTGATTCTGATTCGGCATTTGAGGTCAATGTAAGATCAAAGCCAGGTACTAAGGTTTCATCGGAAGCTGAAATCGGCGCGAAAAAGTCTTGTAAGAGAGGAAAATTCGAGTGTGTTACTTGCAACAGAAGTTTTCGTTCATATCAAGCTCTTGGAGGTCATAGAGCTGGTCACAAGAGGAGCAAAGGATGTTTTGCTTCAAAGATTGATCTAAACAGTGAAAATGAAAACAATGCTGAATTGGAAATGGAAATGGAAATGGAAGTAGATATAAAGATCAATGTTCCTGTTGAGGGCATCGTCGAAGAAGTTCCGGAGATAAGGAACTTCCTTGATCTTAATCTTCCTGCTGATGCAAGTATTGCTTATGAAAGAAATGGTCCTTCTGAGATTTACACACCATGGTGGTTAGATGGAAGTAACTTCAAGCAAGAGTCAATGGTAGGCCTACTATCAAACTAG 1290 0.3744 MEDDQEVIKHVCRICCKSFPCGRSLGGHMRSHDHVKTNDHHHDIDDDDDDDDDDDDDGDDESFVVVSASTTVKKEEGCSEGYYGLRENPKKTWRVLNDSTSDDQEEIFDVVLDKLCKECGRGFQSRKALFGHMKCHSNSKNNGFELDEQESHTDAAAVLPSRKRRSKRRLKTRYVNGNSCSSSVVNFAANSVSEKEEHEQEEVAMSLMMLSRDVRSWCGLNSIAESSDNDDNKLKSLEIFDDESKGNDGLKMKKTRNSVIENGKDKKKNKNKVKIEVDSDSAFEVNVRSKPGTKVSSEAEIGAKKSCKRGKFECVTCNRSFRSYQALGGHRAGHKRSKGCFASKIDLNSENENNAELEMEMEMEVDIKINVPVEGIVEEVPEIRNFLDLNLPADASIAYERNGPSEIYTPWWLDGSNFKQESMVGLLSN 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00565 429 MobiDBLite consensus disorder prediction 35 61 - -
Vifa2g00565 429 Pfam C2H2-type zinc finger 312 336 - -
Vifa2g00565 429 Pfam C2H2-type zinc finger 10 32 - -
Vifa2g00565 429 Pfam C2H2-type zinc finger 116 136 - -
Vifa2g00565 429 ProSitePatterns Zinc finger C2H2 type domain signature. 314 334 IPR013087 -
Vifa2g00565 429 SUPERFAMILY beta-beta-alpha zinc fingers 115 334 IPR036236 -
Vifa2g00565 429 MobiDBLite consensus disorder prediction 44 61 - -
Vifa2g00565 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Vifa2g00565 429 SMART c2h2final6 312 334 IPR013087 -
Vifa2g00565 429 SMART c2h2final6 10 32 IPR013087 -
Vifa2g00565 429 SMART c2h2final6 114 136 IPR013087 -
Vifa2g00565 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 312 339 IPR013087 -
Vifa2g00565 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 37 IPR013087 -
Vifa2g00565 429 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 354 - -
Vifa2g00565 429 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Vifa2g00565 429 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00565 Vifa-Chr2 116271051 116272340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00565 9 257 C2H2 Transcription Factor Family AT1G26610 34.717 1.28e-29 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g00565 zf-C2H2_6 2.8e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00565 - - psat:127085453 597.43