Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00556 ATGTCTTTTTGGTTGATCGCATTCTCTAGTTTGATACTATGTATTTTAATATACCGTTTCCTAAAATTTGCAACAAAATCATCTTCATCTTCATCTTCACTACCACTTCCACCTGGACCAAAACCATGGCCTATAATAGGTAACATGCCTCACTTAGGCTCTGCCCCACATCAATCTATGGCAGCCTTGGCTCAAACTCATGGCCCTCTCATGCACCTCAAATTAGGGTTTGTAGACGTTATCGTCGCCGCTTCCGCCTCCGTGGCTGAACAATTCTTAAAGGTTCATGATGCTAACTTTAGTAGCCGTCCACCTAACGCCGCAGCTAAGAATATGGTTTACAACTATCAAGATCTTGTCTTCGCTCCTTATGGTCCAAGGTGGAGGTTGCTCCGAAAAATATCATCCGTCCATCTATTTTCCAACAAAGTTATGGCCGAATTTCAACATTTACGTGAGGAAGAGGCAGCAAGGTTGACAAGCAAATTGGCAAGTAGTTATACCGACACAAAAGCTGTGAAATTGGGACAACTATTGAGTGTATGCACAACCAATGCACTTGCTAGGGCTATGTTAGGAAGAAGAGTGTTCCATGATGAGGATGGTGGTAATGACCCTAAAGCTAATGACTTCAAGGAGATGATTCTTGAAACTATGGTGTTAGCTGGAGTTTTCAACATTAGTGATTTCATTCCTTCATTGGAATGGTTAGATCTTCAAGGAGTTCAAGCCAAAATGAAAATATTGCACAAGAAATTTGATGCATTCTTAACAAACATTATTGAGGAACATGATAGTTCTAATTCTAAGACTGAGAAACATAAAGATTTGTTGACTACTTTGTTGGCACTTAGAGATGAAGGAGATGATGAAGGAAATAAACTTACTAATATTGAAATCAAAGCTTTGCTTTTGAACATGTTTGTAGCTGGAACAGATACATCATCAAGTACTACAGAATGGGCCATTGCAGAACTTATCAAAAATCCAAAAATCTTAGCCCAAGTCCAACAAGAATTGGACAATGTTGTGGGCCGAGACAGGAACGTGAAAGAAGAGGACATACCAAACCTACCTTATCTACATGCAGTTATAAAAGAAACATTTCGTTTGCATCCGTCAACACCTCTTTCTCTTCCAAGAATCGCTTCAGAAAGTTGTGAGATTTTTGGATACCACATTCCAAAAGGTGCAACTGTTTTGATTAATGTATGGGCTATAGCTCGTGACCCAAAGCAATGGGCTGACCCGTTAGTATTCAAGCCCGAAAGATTCTTACCAGGTGGTGACAAGTGTGATGTTGATATTAAGGGAAATGATTTTGAAGTTATACCTTTTGGTGCTGGACGTAGAATTTGTGTTGGGATGAGTCTTGGGCTTCGCATGGTTCAACTTTTAACTGCTACATTGGCCCATTCGTTTAATTGGGAACTTGAAAATGGGCTCAAACCGGAAAAAATGAACATGGATGAGGGTTTTGGACTTACTCTTCAACGCGCTGTGCCATTATCAGTTCACCCTAAACCCAGGCTCTCACCACACGTGTACTCTTCAGATTTCTAA 1563 0.4031 MSFWLIAFSSLILCILIYRFLKFATKSSSSSSSLPLPPGPKPWPIIGNMPHLGSAPHQSMAALAQTHGPLMHLKLGFVDVIVAASASVAEQFLKVHDANFSSRPPNAAAKNMVYNYQDLVFAPYGPRWRLLRKISSVHLFSNKVMAEFQHLREEEAARLTSKLASSYTDTKAVKLGQLLSVCTTNALARAMLGRRVFHDEDGGNDPKANDFKEMILETMVLAGVFNISDFIPSLEWLDLQGVQAKMKILHKKFDAFLTNIIEEHDSSNSKTEKHKDLLTTLLALRDEGDDEGNKLTNIEIKALLLNMFVAGTDTSSSTTEWAIAELIKNPKILAQVQQELDNVVGRDRNVKEEDIPNLPYLHAVIKETFRLHPSTPLSLPRIASESCEIFGYHIPKGATVLINVWAIARDPKQWADPLVFKPERFLPGGDKCDVDIKGNDFEVIPFGAGRRICVGMSLGLRMVQLLTATLAHSFNWELENGLKPEKMNMDEGFGLTLQRAVPLSVHPKPRLSPHVYSSDF 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00556 520 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g00556 520 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g00556 520 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g00556 520 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g00556 520 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g00556 520 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g00556 520 PRINTS E-class P450 group I signature 88 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g00556 520 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g00556 520 PRINTS E-class P450 group I signature 403 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g00556 520 SUPERFAMILY Cytochrome P450 37 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g00556 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506|GO:0016705
Vifa2g00556 520 PANTHER CYTOCHROME P450 98A9 10 517 - -
Vifa2g00556 520 Pfam Cytochrome P450 37 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g00556 520 Gene3D Cytochrome P450 22 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g00556 520 FunFam Cytochrome P-450 19 26 508 - -
Vifa2g00556 520 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g00556 520 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g00556 520 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g00556 520 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00556 Vifa-Chr2 111353477 111357126 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00556 8 517 Cytochrome P450 AT5G07990 63.601 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00556 K05280 - gmx:547475 794.653