Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00543 ATGGCAGCTCAAAGCTCTTCTTCCAGTAAATCACAAGTTTCCAAGAACGTTTCTCATGACCATTTCTTCGTATGGAGGGAATTTGTATGGGGAGCTGTTGCGGGTGCTTTTGGGGAAGGAATGATGCATCCTGTAGATACCATCAAAACACGAATACAAAGTCAAGCTATTCTAAATGGTGTTGAGAACCAGAAAGGCATATTGCAGATGGTGCGGTCTGTCTGGAAGGTTGATGGATTAAAAGGCTTTTATAGGGGTGTACTACCTGGTGTTACTGGGTCTCTTGCGACTGGTGCAACATATTTTGGTGTCATAGAGTCAACTAAAAAGTGGATTGAGGATTCACATCCTAGCCTTGAGGGCCATTGGGCACATTTCATTGCTGGAGCTGTTGGAGATACACTTGGTTCTGTAGTGTATGTTCCATGCGAAGTGATAAAGCAGCGCATGCAAGTTCAAGGCACAATTACATCCTGGACTTCTACTGCAATTAAGAATGGCATTGAAATAAAACCTGGTGCAGAAATATATGACTATTATAAAGGGATGTTCCATGCAGGCTGCTCAATATGGAGAACACAGGGCTTAAAGGGTTTATATGCAGGATATTTGTCTACACTGGCAAGGGATGTACCATTTGCTGGTCTGATGGTTGTATTCTATGAAGCTTTGAAAGATGCTGCAGAGTATGGGAAGCAAAGATGGATATCTAACCCAAATTGGCATGTTAATAATTCTTTTGAAGGACTGGTTTTAGGAGGATTAGCTGGTGGTCTCAGTGCATATCTCACCACTCCTTTGGATGTCGTCAAAACTAGGCTGCAAGTTCAGGGTTCAACTTTGAGGTATAAGGGTTGGTTGGATGCTATCTACACTATATGGGCTAAGGAAGGCTTGGAGGGGATGTTTAGGGGAAGCATTCCCAGAATTGCATGGTACATTCCGGCTTCAGCGCTTACATTCATGGCTGTGGAATTTCTCAGAGAACATTTTAATGAAGGAGTGCCCAATGGTAATTTGAGAGTACAAAAGAAGAAATCTTTGCAGGAAGCTACTTAA 1059 0.4259 MAAQSSSSSKSQVSKNVSHDHFFVWREFVWGAVAGAFGEGMMHPVDTIKTRIQSQAILNGVENQKGILQMVRSVWKVDGLKGFYRGVLPGVTGSLATGATYFGVIESTKKWIEDSHPSLEGHWAHFIAGAVGDTLGSVVYVPCEVIKQRMQVQGTITSWTSTAIKNGIEIKPGAEIYDYYKGMFHAGCSIWRTQGLKGLYAGYLSTLARDVPFAGLMVVFYEALKDAAEYGKQRWISNPNWHVNNSFEGLVLGGLAGGLSAYLTTPLDVVKTRLQVQGSTLRYKGWLDAIYTIWAKEGLEGMFRGSIPRIAWYIPASALTFMAVEFLREHFNEGVPNGNLRVQKKKSLQEAT 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00543 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 120 227 IPR018108 -
Vifa2g00543 352 SUPERFAMILY Mitochondrial carrier 21 327 IPR023395 -
Vifa2g00543 352 Gene3D Mitochondrial carrier domain 2 170 IPR023395 -
Vifa2g00543 352 Gene3D Mitochondrial carrier domain 174 348 IPR023395 -
Vifa2g00543 352 FunFam Mitochondrial substrate carrier family protein 168 346 - -
Vifa2g00543 352 Pfam Mitochondrial carrier protein 122 227 IPR018108 -
Vifa2g00543 352 Pfam Mitochondrial carrier protein 23 114 IPR018108 -
Vifa2g00543 352 Pfam Mitochondrial carrier protein 246 333 IPR018108 -
Vifa2g00543 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 330 IPR018108 -
Vifa2g00543 352 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 7 334 - -
Vifa2g00543 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 22 111 IPR018108 -
Vifa2g00543 352 FunFam Mitochondrial substrate carrier family protein 7 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00543 Vifa-Chr2 103923899 103929332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00543 123 337 Chloroplast and Mitochondria Gene Families AT2G30160 26.047 9.60e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00543 - - gmx:100790921 585.489