Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00534 ATGTCAAGTTCAAGAGAAGATAATTATCAAGAAAAGCAAGAAGAAGGTAATAATAATAGTATGAATAACATTGAAAAAAGTAGTAAAGGAGCTTCAAGTAGTTCAAGACAATGGTCATCATCAAGTTTAAGAAATCCAAGAATTGTGAGAGTATCAAGAACATTTGGAGGCAAAGATAGGCATAGCAAAGTTTGCACAATAAGAGGTTTAAGAGATAGAAGGATTAGGCTTTCGGTTCCGACCGCGATTCAATTGTATGATCTTCAAGACAAGCTTGGTTTAGGACAACCAAGCAAAGTGATAGATTGGTTACTCGAAGCAACGAAATTCGATATCGATAAACTTCCTCCACTTCAATTTCCTCAAAGCTTTTCACAATTTCATCATCATGTTCTTCCACAAACCCTACTTCCTTTTCATGATCATCAATCAAGTAATGTTTTGTCTCATGAGCTTTCTCTTGGTCCTTTGTATGAACCTAACTCTTCTACATTTGTTGGAATTCAAAATCTCATGGCGAGATCGAAGTTTTGGGATGTGGATTCATCAAGAGTTGGTAAAGGTAAAGAGGTTGAAAGAGAGTACTTTTGTGAAAAGGGTAAGTGGATCAAAACAAATGATGAAGAAAATCAAGTTGGAGAAGCTAGTTACAACAATTTTCCTCAAGTTTCAACTCAAAAGCTTTTTCCTATGGAGACTCATTCTAATTATCTAAACAATGCTATGTCATATAATAGCAACTACCACTCAGAAGCTTCTAGTTTGTCTTTATCTCAATTTGGAAGTAATCATGGATTGTTCCAATCTCATCATCAACAAGTAGATCCAAATCAAAGTAATGGAAATGCTTTTCAATTTCCATTTTCTTTTCAAAATTCACAACTATTGTTTGGTCCTTCTTCTTCAACTACTCCATCATCATCACTTTTGAATAATCCTTTTATGAACAATAACTCAATTGAAAATGATCCAAGAGTACCATTCAACCATTTTCAGTTCTCAAACTCAACTTCTTCTCAACCTATGCCTCATTCTCTCATTCCATCTTTTCATCACTCCTTCAATCCGCCTCCCGTTAGACCTTTTCCAATTCCATTTAGCTCGAAGCTTCTCGACTCAGATAACAATGACAATAGCAACCAGATGGATCATAGGGGTTGTCGCGATCGTTCTTGA 1176 0.3554 MSSSREDNYQEKQEEGNNNSMNNIEKSSKGASSSSRQWSSSSLRNPRIVRVSRTFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKFDIDKLPPLQFPQSFSQFHHHVLPQTLLPFHDHQSSNVLSHELSLGPLYEPNSSTFVGIQNLMARSKFWDVDSSRVGKGKEVEREYFCEKGKWIKTNDEENQVGEASYNNFPQVSTQKLFPMETHSNYLNNAMSYNSNYHSEASSLSLSQFGSNHGLFQSHHQQVDPNQSNGNAFQFPFSFQNSQLLFGPSSSTTPSSSLLNNPFMNNNSIENDPRVPFNHFQFSNSTSSQPMPHSLIPSFHHSFNPPPVRPFPIPFSSKLLDSDNNDNSNQMDHRGCRDRS 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00534 391 Pfam TCP family transcription factor 57 125 IPR017887 -
Vifa2g00534 391 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 345 IPR005333 GO:0003700
Vifa2g00534 391 MobiDBLite consensus disorder prediction 14 44 - -
Vifa2g00534 391 MobiDBLite consensus disorder prediction 1 44 - -
Vifa2g00534 391 ProSiteProfiles TCP domain profile. 57 115 IPR017887 -
Vifa2g00534 391 MobiDBLite consensus disorder prediction 365 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00534 Vifa-Chr2 100124738 100125913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00534 6 263 TCP Transcription Factor Family AT5G60970 44.776 2.38e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa2g00534 TCP 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00534 - - cam:101498052 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00534 2 100124738 100125913 Vifa2g00534 2 100124738 100125913 PCT