Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00529 ATGTGGAAATTTAAGCCATTCAGCCACAAAGAGCAAAGTGGTATTGAAGGCCGTTCTATAGATGTTGGAAATCTTAAAATAAATGTCCACAAGGTCATTGCTGAAGGAGGTTTCTCATGTGTCTACTTGGCTCGTGATTCTGTACATATGTCTAAACAGTATGCTTTGAAGCATATAATATGCAACGATGAAGAATCACTTGGATTGGTGAAGAAGGAGATATCTGTGATGAAGTTGCTGATTGGACATCCCAATGTCGTCAAACTTCATGCTCATGCCATCTATGATATGGGTAGAACCAAAGAGGCATTCCTTGTAATGGAGTTTTGTGAGAAATCTCTGGTTACTGTGCTGGAGAGCCGAGGAGCTGGTTATTTTGATGAGAGACAGATTCTTTTAATCTTCAGGGATGTGTGTAATGCAGTTTTCGCCATGCACTGTCAGTCTCTGCCTATTGCTCACCGAGACTTGAAAGCAGAGAACCTTCTGTTAGGTTCAGATGGTTTATGGAAGTTGTGTGATTTTGGAAGCATTTCCACAAATCACAAACGTTTTGAGAAGCCAGAAGAAATGGGAATTGAGGAAGATAATATCAGAAAGTACACAACTCCCGCCTACAGAGCTCCTGAGATGTGGGACCTGTTCCTCAAAGAAGTTATTAATGAGAAAGTAGACATATGGGCACTGGGGTGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCGTTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGATTTACCTAAATTCAGCTCGTCCCTCACAGACTTGATCAGAGACATGCTTCAAGCTAGACCAGACGACAGACCAGATATCACGCAGGCAAGCGCTTTGCTTGATTGGCCATTCATCTCCATCAATTTAGGTGCTTCAATGTCTACAAAGAAATCAAGTCCAGTGCCTCGCAGAAATCCACCTTCTCCTCCATCAGTTGGAGAACCTAAAACTACCCCTCAGACATCTCCTCCTTCCAGGGGAGGTGAATGTGGGGGGCAGCTTGGTGCTTTCTGGTCCACTATGCATGCAAAGGATTCACTTGTCCCTGAGGAAAAAGGCAAAGCTATATATGATGAAGATCGATCTAGCCACCATGTGTCACTGAAACATGACAGAGTTCGTCCAGACAATGATCAGTTACCCAAAAATGTTGGTACAAACAAAGTGGCTAACACACAAAGTCAGACTGTAAAAAGCAGTGTACATGGAAAGTTACACAAGCCTGAAATTGCATCTTCCAAGGACTTCGAAATTAATTTTTTCCCAGATAAAGATCATGCAAGTCAGAGGCATATGTCAAATCTGGAGAAGAATAATAATTTCCAAGACCAGTCTTTTAACACTTTTGTTGCAGAATTTGATACCACTAAGCTGAACTCCGGGCATGGTAACAAATCCACAAGGGAAGAAGTATTAGAGTCTGAGGTGGAGAAACTCAGAGAGCAGCTGAAGGAAGCTAACTTGGACAAATCTGAAATAACTGCCAAGTATGAAAAGCTTACTGCTATCTGCCGTTCACAGAGGCAAGAATTACAGGACCTCAAGCAAGCACTTGCAGCAAGAACTCCATCTCCAAATAGAGAGAGTTTCAGAACCTCTCCTGGAGTTGCAGCATCTGCATCTTTGCAGGATAAAAGTGAATGGAAAACTCCTAGTTCTGAACTAAAGTCATGGTTAGCCTTCCCGGAGAAAACTGAACCATCGATGAAGTCCCTTTCAGCAGACAATGCTTCTAAATCCGTTAGGTCAAGAGAAGGTCAGCAAATCAAGCAGGTCACTCAACCAGCTTCTGATTTTGATTCTTGGGGTTTTGGTACAGATACATTTAGTGCTGCTCGTGCGGGTAGTGGTAGCCCCCAGATGCCAAGACCTGGCGAAGGAAGTAAAGCTCATAGCTTCGGTGAGGCAAAGGGATTTGAGAGCAAGTCGAATTCTCAACCTGCTGGATGGGCTGGTTTTTAA 2001 0.4313 MWKFKPFSHKEQSGIEGRSIDVGNLKINVHKVIAEGGFSCVYLARDSVHMSKQYALKHIICNDEESLGLVKKEISVMKLLIGHPNVVKLHAHAIYDMGRTKEAFLVMEFCEKSLVTVLESRGAGYFDERQILLIFRDVCNAVFAMHCQSLPIAHRDLKAENLLLGSDGLWKLCDFGSISTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLKEVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKFSSSLTDLIRDMLQARPDDRPDITQASALLDWPFISINLGASMSTKKSSPVPRRNPPSPPSVGEPKTTPQTSPPSRGGECGGQLGAFWSTMHAKDSLVPEEKGKAIYDEDRSSHHVSLKHDRVRPDNDQLPKNVGTNKVANTQSQTVKSSVHGKLHKPEIASSKDFEINFFPDKDHASQRHMSNLEKNNNFQDQSFNTFVAEFDTTKLNSGHGNKSTREEVLESEVEKLREQLKEANLDKSEITAKYEKLTAICRSQRQELQDLKQALAARTPSPNRESFRTSPGVAASASLQDKSEWKTPSSELKSWLAFPEKTEPSMKSLSADNASKSVRSREGQQIKQVTQPASDFDSWGFGTDTFSAARAGSGSPQMPRPGEGSKAHSFGEAKGFESKSNSQPAGWAGF 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00529 666 ProSiteProfiles Protein kinase domain profile. 27 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00529 666 MobiDBLite consensus disorder prediction 373 399 - -
Vifa2g00529 666 Gene3D Transferase(Phosphotransferase) domain 1 9 304 - -
Vifa2g00529 666 MobiDBLite consensus disorder prediction 531 562 - -
Vifa2g00529 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Vifa2g00529 666 Coils Coil 482 530 - -
Vifa2g00529 666 SMART serkin_6 27 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00529 666 CDD STKc_GAK_like 26 288 - -
Vifa2g00529 666 MobiDBLite consensus disorder prediction 535 561 - -
Vifa2g00529 666 FunFam probable serine/threonine-protein kinase DDB_G0280111 10 309 - -
Vifa2g00529 666 SUPERFAMILY Protein kinase-like (PK-like) 28 298 IPR011009 -
Vifa2g00529 666 MobiDBLite consensus disorder prediction 315 330 - -
Vifa2g00529 666 Pfam Protein kinase domain 29 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00529 666 MobiDBLite consensus disorder prediction 651 666 - -
Vifa2g00529 666 MobiDBLite consensus disorder prediction 582 617 - -
Vifa2g00529 666 MobiDBLite consensus disorder prediction 307 347 - -
Vifa2g00529 666 MobiDBLite consensus disorder prediction 578 666 - -
Vifa2g00529 666 PANTHER SERINE/THREONINE PROTEIN KINASE 1 649 - -
Vifa2g00529 666 MobiDBLite consensus disorder prediction 373 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00529 Vifa-Chr2 98386984 98389820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00529 26 286 Miscellaneous Gene Families AT2G34180 30.627 4.33e-20 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Vifa2g00529 Pkinase 1.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00529 K08853 - gmx:100808507 967.607