Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00528 ATGTGGAAATTTAAGCCATTCAGCCACAAAGAGCAAAGTGGTATTGAAGGCCGTTCTATAGATGTTGGAAATCTTAAAATAAATGTCCACAAGGTCATTGCTGAAGGAGGTTTCTCATGTGTCTACTTGGCTCGTGATTCTGTACATATGTCTAAACAGTATGCTTTGAAGCATATAATATGCAACGATGAAGAATCACTTGGATTGGTGAAGAAGGAGATATCTGTGATGAAGTTGCTGATTGGACATCCCAATGTCGTCAAACTTCATGCTCATGCCATCTATGATATGGGTAGAACCAAAGAGGCATTCCTTGTAATGGAGTTTTGTGAGAAATCTCTGGTTACTGTGCTGGAGAGCCGAGGAGCTGGTTATTTTGATGAGAGACAGATTCTTTTAATCTTCAGGGATGTGTGTAATGCAGTTTTCGCCATGCACTGTCAGTCTCTGCCTATTGCTCACCGAGACTTGAAAGCAGAGAACCTTCTGTTAGGTTCAGATGGTTTATGGAAGTTGTGTGATTTTGGAAGCATTTCCACAAATCACAAACGTTTTGAGAAGCCAGAAGAAATGGGAATTGAGGAAGATAATATCAGAAAGTACACAACTCCCGCCTACAGAGCTCCTGAGATGTGGGACCTGTTCCTCAAAGAAGTTATTAATGAGAAAGTAGACATATGGGCACTGGGGTGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCGTTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGATTTACCTAAATTCAGCTCGTCCCTCACAGACTTGATCAGAGACATGCTTCAAGCTAGACCAGACGACAGACCAGATATCACGCAGGTTTGGTTTCGTGTTAATGAAAAGCTGCCTGTTGATTTACAAAAGTCATTACCTGACAGGCCACCTGAATCGTCCTCTTCCAACAATCACGAAGGTGCTTCAATGTCTACAAAGAAATCAAGTCCAGTGCCTCGCAGAAATCCACCTTCTCCTCCATCAGTTGGAGAACCTAAAACTACCCCTCAGACATCTCCTCCTTCCAGGGGAGGTGAATGTGGGGGGCAGCTTGGTGCTTTCTGGTCCACTATGCATGCAAAGGATTCACTTGTCCCTGAGGAAAAAGGCAAAGCTATATATGATGAAGATCGATCTAGCCACCATGTGTCACTGAAACATGACAGAGTTCGTCCAGACAATGATCAGTTACCCAAAAATGTTGGTACAAACAAAGTGGCTAACACACAAAGTCAGACTGTAAAAAGCAGTGTACATGGAAAGTTACACAAGCCTGAAATTGCATCTTCCAAGGACTTCGAAATTAATTTTTTCCCAGATAAAGATCATGCAAGTCAGAGGCATATGTCAAATCTGGAGAAGAATAATAATTTCCAAGACCAGTCTTTTAACACTTTTGTTGCAGAATTTGATACCACTAAGCTGAACTCCGGGCATGGTAACAAATCCACAAGGGAAGAAGTATTAGAGTCTGAGGTGGAGAAACTCAGAGAGCAGCTGAAGGAAGCTAACTTGGACAAATCTGAAATAACTGCCAAGTATGAAAAGCTTACTGCTATCTGCCGTTCACAGAGGCAAGAATTACAGGACCTCAAGCAAGCACTTGCAGCAAGAACTCCATCTCCAAATAGAGAGAGTTTCAGAACCTCTCCTGGAGTTGCAGCATCTGCATCTTTGCAGGATAAAAGTGAATGGAAAACTCCTAGTTCTGAACTAAAGTCATGGTTAGCCTTCCCGGAGAAAACTGAACCATCGATGAAGTCCCTTTCAGCAGACAATGCTTCTAAATCCGTTAGGTCAAGAGAAGGTCAGCAAATCAAGCAGGTCACTCAACCAGCTTCTGATTTTGATTCTTGGGGTTTTGGTACAGATACATTTAGTGCTGCTCGTGCGGGTAGTGGTAGCCCCCAGATGCCAAGACCTGGCGAAGGAAGTAAAGCTCATAGCTTCGGTGAGGCAAAGGGATTTGAGAGCAAGTCGAATTCTCAACCTGCTGGATGGGCTGGTTTTTAA 2052 0.4308 MWKFKPFSHKEQSGIEGRSIDVGNLKINVHKVIAEGGFSCVYLARDSVHMSKQYALKHIICNDEESLGLVKKEISVMKLLIGHPNVVKLHAHAIYDMGRTKEAFLVMEFCEKSLVTVLESRGAGYFDERQILLIFRDVCNAVFAMHCQSLPIAHRDLKAENLLLGSDGLWKLCDFGSISTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLKEVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKFSSSLTDLIRDMLQARPDDRPDITQVWFRVNEKLPVDLQKSLPDRPPESSSSNNHEGASMSTKKSSPVPRRNPPSPPSVGEPKTTPQTSPPSRGGECGGQLGAFWSTMHAKDSLVPEEKGKAIYDEDRSSHHVSLKHDRVRPDNDQLPKNVGTNKVANTQSQTVKSSVHGKLHKPEIASSKDFEINFFPDKDHASQRHMSNLEKNNNFQDQSFNTFVAEFDTTKLNSGHGNKSTREEVLESEVEKLREQLKEANLDKSEITAKYEKLTAICRSQRQELQDLKQALAARTPSPNRESFRTSPGVAASASLQDKSEWKTPSSELKSWLAFPEKTEPSMKSLSADNASKSVRSREGQQIKQVTQPASDFDSWGFGTDTFSAARAGSGSPQMPRPGEGSKAHSFGEAKGFESKSNSQPAGWAGF 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00528 683 MobiDBLite consensus disorder prediction 390 408 - -
Vifa2g00528 683 Coils Coil 499 547 - -
Vifa2g00528 683 MobiDBLite consensus disorder prediction 595 683 - -
Vifa2g00528 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Vifa2g00528 683 SUPERFAMILY Protein kinase-like (PK-like) 28 342 IPR011009 -
Vifa2g00528 683 MobiDBLite consensus disorder prediction 301 364 - -
Vifa2g00528 683 ProSiteProfiles Protein kinase domain profile. 27 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00528 683 MobiDBLite consensus disorder prediction 390 416 - -
Vifa2g00528 683 MobiDBLite consensus disorder prediction 599 634 - -
Vifa2g00528 683 FunFam probable serine/threonine-protein kinase DDB_G0280111 10 305 - -
Vifa2g00528 683 CDD STKc_GAK_like 26 298 - -
Vifa2g00528 683 MobiDBLite consensus disorder prediction 548 579 - -
Vifa2g00528 683 SMART serkin_6 27 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00528 683 MobiDBLite consensus disorder prediction 668 683 - -
Vifa2g00528 683 PANTHER SERINE/THREONINE PROTEIN KINASE 1 666 - -
Vifa2g00528 683 MobiDBLite consensus disorder prediction 307 331 - -
Vifa2g00528 683 Pfam Protein kinase domain 29 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00528 683 Gene3D Transferase(Phosphotransferase) domain 1 9 306 - -
Vifa2g00528 683 MobiDBLite consensus disorder prediction 552 578 - -
Vifa2g00528 683 MobiDBLite consensus disorder prediction 332 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00528 Vifa-Chr2 98386984 98389820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00528 26 292 Miscellaneous Gene Families AT2G34180 30.249 4.22e-21 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Vifa2g00528 Pkinase 2.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00528 K08853 - gmx:100808507 1035.02