Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00523 ATGTCTTCTCTTTCTCTTCTCTCCCAACCCAATTTCCTTTCGCTCACAACACAACCACCAAACTTCGATAACTTGAAACCCAAGACATCACTGTTCTCGCAACGCCGGTTTAGGAGATGTGTAACGGTTTCTGAACAAGCAACCGCGCCGGCTCCGGCGGTTAGAAAGCTTTACGTTGGTAACATTCCTCGGACTGTTGGGAATGATGAGCTTGCTCAGATTGTTCAAGAACATGGCGCTGTTGAGAAAGCTGAGGTTATGTATGACAAATACTCTAAAAGGAGCCGTCGTTTTGCGTTTGTTACAATGAAAACCGTTGAGGATGCAAATGCAGCAGTTGAGAAACTCAATGGCACTCAAATTGGAGGACGTGAGATTAAAGTGAATATAACCGAAAAACCTTTAACAACAACAGGAGGGTTGTCACTTCAGGCCGAGGAATCCCAATTTGTTGACAGTCCCTACAAGGTATATGTTGGAAATCTGGCTAAAAGTGTAACATCTGATATCCTTAAAAATTTCTTCTCTGAAAAAGGAAAAGCTCTTAGTGCCAAGATTTCACGGGTTCCTGGAACCTCAAAATCCAGTGGTTTTGGTTTTGTTACATTTTCATCGGATGAGGATGTAGAGGCTGCCATCTCTTCTTTCAACAACGCTTTGTTAGAAGGTCAAAAGATCCGGGTGAATAAGGCGTAG 696 0.431 MSSLSLLSQPNFLSLTTQPPNFDNLKPKTSLFSQRRFRRCVTVSEQATAPAPAVRKLYVGNIPRTVGNDELAQIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAVEKLNGTQIGGREIKVNITEKPLTTTGGLSLQAEESQFVDSPYKVYVGNLAKSVTSDILKNFFSEKGKALSAKISRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00523 231 Gene3D - 142 231 IPR012677 -
Vifa2g00523 231 PANTHER OS02G0815200 PROTEIN 50 230 - -
Vifa2g00523 231 Gene3D - 33 141 IPR012677 -
Vifa2g00523 231 SUPERFAMILY RNA-binding domain, RBD 49 134 IPR035979 GO:0003676
Vifa2g00523 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 231 IPR000504 GO:0003723
Vifa2g00523 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 133 IPR000504 GO:0003723
Vifa2g00523 231 FunFam 30S ribosomal protein 2, chloroplastic 142 231 - -
Vifa2g00523 231 CDD RRM1_PSRP2_like 56 135 - -
Vifa2g00523 231 SUPERFAMILY RNA-binding domain, RBD 150 231 IPR035979 GO:0003676
Vifa2g00523 231 SMART rrm1_1 56 129 IPR000504 GO:0003723
Vifa2g00523 231 SMART rrm1_1 156 229 IPR000504 GO:0003723
Vifa2g00523 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 127 IPR000504 GO:0003723
Vifa2g00523 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 227 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00523 Vifa-Chr2 95651905 95654204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00523 57 228 Eukaryotic Initiation Factors Gene Family AT1G22760 27.168 8.99e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00523 K13126 - rcu:8261127 307.76