Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00507 ATGGGTGTTATGTATGAAGAGATAAGAAGAAACCAAGAAATAGATTCAAAACAACACTATCACCAACAAAACAATTCATTGTTTACAAACCTAATTGACAACAACAATAATCATCATAGCTATATCAACAATGAAGAATCTTTTGCAACTGAAAATTATCATCCATCCACAAGTTCAGAAATGGATACTATGTTATCAAAGCTGATATCATCCAACAATCGATGGAGCAATTGTGAAGAACAATTGCAAGAGTTTGATGTGAAGCCTGTGAAGAATGAAATAGGTGATTACTCTTATGGAGGATCTGAGTTGACTTATCAAGACTTTTCAAGTGGTTCTGGAAATGGCTTTTATGGATCTTTTGGTGGAGGAAACATTATTAGGGATTCTGAGAATTGTGCTATATCTAAAATGGGTGTGAGGAATTGCAACAATCTTGTTAGGCAAAAGAGTTCTCCTGCAGGTTTTTTCGATAGTGAAAATGGTCTTACATCATTGAGAGAAGACTCAAATGGACAAGAAACTATACATGGTACACTTAACTTCTCATCTATGCCATCTACATGCTTGAAAAGACTGCCACAAATAGATGAAAATGGAATCCAAATCATAGAAGCAAATGGTGACTCCAAATCTCATCATATGCCTAGCTTCACAAATGAATTTTGGGACAATTCATCATTCAATGCTGAAAAAACAGAAACTGAAGATGAAATCATGTTTTCAACTTCAACTGGTTTGGAATCTCATGAAGAGAAGTTTCTTCAAATTCAAGATTCCGTTCCTTGTAAAATTCGAGCGAAAAGAGGGTTTGCAACTCATCCAAGAAGCATTGCAGAAAGGGTAAGAAGAACGCGAATTAGTGATAGAATCAAGAAACTACAAGGTCTTTTCCCGAAATCAGATAAGCAAACAAGTACAGCAGATATGTTAGATTTGGCAGTTGAGTACATCAAAGACTTGCAAGAACAGGTTCAGTTACTCACAGATTGTAAAGAAAAATGCAAATGTACAAGTCATGAGAAGCAACACTCTAGAAATTGTAGCTGA 1050 0.3533 MGVMYEEIRRNQEIDSKQHYHQQNNSLFTNLIDNNNNHHSYINNEESFATENYHPSTSSEMDTMLSKLISSNNRWSNCEEQLQEFDVKPVKNEIGDYSYGGSELTYQDFSSGSGNGFYGSFGGGNIIRDSENCAISKMGVRNCNNLVRQKSSPAGFFDSENGLTSLREDSNGQETIHGTLNFSSMPSTCLKRLPQIDENGIQIIEANGDSKSHHMPSFTNEFWDNSSFNAEKTETEDEIMFSTSTGLESHEEKFLQIQDSVPCKIRAKRGFATHPRSIAERVRRTRISDRIKKLQGLFPKSDKQTSTADMLDLAVEYIKDLQEQVQLLTDCKEKCKCTSHEKQHSRNCS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00507 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 321 IPR011598 GO:0046983
Vifa2g00507 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 273 338 IPR036638 GO:0046983
Vifa2g00507 349 CDD bHLH_AtbHLH_like 276 328 IPR045239 -
Vifa2g00507 349 SMART finulus 277 327 IPR011598 GO:0046983
Vifa2g00507 349 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 115 343 - -
Vifa2g00507 349 FunFam Transcription factor bHLH130 family 272 341 - -
Vifa2g00507 349 Pfam Helix-loop-helix DNA-binding domain 276 322 IPR011598 GO:0046983
Vifa2g00507 349 Gene3D - 272 347 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00507 Vifa-Chr2 92314385 92316595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00507 145 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 42.731 1.69e-37 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa2g00507 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00507 - - gmx:100812802 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00507 2 92314385 92316595 Vifa2g00507 2 92314385 92316595 ECH