Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00500 ATGGCTCAAAGAACAGAAAATGAAGAAACTGAATTCAAAGTACCTGAAACGATATCTCTTTGCATCAACAACTGCGGCGTAATCGGTAATCCGTCAACGAACAATATGTGTCAAAATTGCTTCACCGCCTCAACCGCTACCACTTCTTCCACCGTCGGGATCGGAATAACCGGAACCGGAATCGCACCTCAATCTTCCAGATCTGTTCGATCTCCGAAGAGATCTTTACCGGAGGAATCATCATCGGTTATTACAGATCGGAGTTCGTCAGATCAACCGATTGTTTCCGAGGCGAAGCGTGTGGTTAGCCGATGCTCCGGTTGCCGGAGGAAGGTAGGGTTGACCGGATTCCGATGTAGATGCGGTGATCTTTTCTGCTCCGAACATCGTTACTCCGATCGGCATGATTGTAGCTATGATTATAAAGGTGCTGGAAGAGAAGCTATTGCGAGGGAGAATCCTGTTATCAGAGCAGCGAAAATCGTTAAGGTTTGA 495 0.4707 MAQRTENEETEFKVPETISLCINNCGVIGNPSTNNMCQNCFTASTATTSSTVGIGITGTGIAPQSSRSVRSPKRSLPEESSSVITDRSSSDQPIVSEAKRVVSRCSGCRRKVGLTGFRCRCGDLFCSEHRYSDRHDCSYDYKGAGREAIARENPVIRAAKIVKV 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00500 164 Pfam A20-like zinc finger 19 41 IPR002653 GO:0003677|GO:0008270
Vifa2g00500 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 20 50 - -
Vifa2g00500 164 FunFam Zinc finger AN1-type containing 6 78 160 - -
Vifa2g00500 164 PANTHER AN1-TYPE ZINC FINGER PROTEIN 19 163 - -
Vifa2g00500 164 ProSiteProfiles Zinc finger AN1-type profile. 99 145 IPR000058 GO:0008270
Vifa2g00500 164 ProSiteProfiles Zinc finger A20-type profile. 15 49 IPR002653 GO:0003677|GO:0008270
Vifa2g00500 164 FunFam Zinc finger A20 and AN1 domain-containing stress-associated protein 1 1 83 - -
Vifa2g00500 164 SMART A20_3 18 42 IPR002653 GO:0003677|GO:0008270
Vifa2g00500 164 SUPERFAMILY AN1-like Zinc finger 90 158 IPR035896 -
Vifa2g00500 164 MobiDBLite consensus disorder prediction 57 91 - -
Vifa2g00500 164 Pfam AN1-like Zinc finger 105 142 IPR000058 GO:0008270
Vifa2g00500 164 Gene3D - 1 80 - -
Vifa2g00500 164 Gene3D - 81 160 IPR035896 -
Vifa2g00500 164 SMART AN1_Zf_4 105 142 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00500 Vifa-Chr2 88413658 88414152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00500 8 164 C2H2 Transcription Factor Family AT3G52800 36.207 8.55e-33 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00500 - - vum:124827556 235.728