Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00499 ATGGGGAGTGTTGATCGAGATGATAATCGGATTTTTGAGGCGAATTTCACTAACGATGGTGCGAAGAAGTTGGGAGAAATTGTGAAGGAGAAGCTTAAGGAATTCATGGGTGAATACTCAGATGATACTTTTGTGGAATATGTTATTGTGTTATTGAGGAATGGTAAGAGTAAAGAACAAGCAAAGAGTGAGTTGGATGTTTTTTTGGCAGATAAAAGTGATGCTTTCGTGTGCTGGTTGTGGGATCATCTACATTTGAATTTAGCTTTGTATGTGAAACCGAAAAAATTGCAGGATGAAGCTCCCAGAAGGAAGCTTACATCGGAAATTGAAGCTGCGGTTGATTCAAATTCAAAATTAGAAAGAGGAAATTCTAATAAGTTTTCTAGAACTCGGCGTAACAAAGATTGGAAAGGTTTGGTGAGGGGAGAAGCTGAAGCACGGGCACCTACTATCAGCAGCTCCAAGGTTAATATTGCTCATTTAGATGAAAGGGTCTGCCGAAAATTTAACCATGGTCCAAGGTCACCATCTCCTAAACCTGAATCCACTGGTCAGAGGAAAAGGGACAGAACTGATGAAAAACATAGGACAAAGCGGGATGTTGCCTCACAAGTAAATGGTGCAGCTTCTCGACGTCTGCTTCAGTTTGCAGTTCGAGATGCAGTGGGTACTTCAAGGACATCAAATCTTGGCAAATCAATGGAGCCTTCCTTAAAACGTCTTCGATCTGTAGTTTCTACATCCTCCGGTGATTCGTCTCTGGTTGAACATTATCAGCATGTGCAGCCCACTGCCAGGGTGCCAAATGCAATGACTACAGTGATTAAGGCTGTGGCGGAAGCTGCAGAGGATGTGAAGTCCAAATCCTCAGGAAGTGTATTTGATAGACTTGGTTGTGGTGTGGATTCATCAGCTGATAACAGCCAACTTGATTATCAACAGCAGGAGAAAAGTCAATCGATGCATCTTCAACGAACTGATTACGATGGGCAATTTGCTGCACATACAACTATGATTGAACATGAAACTGGTTTTCCCTCTGATTCTAATTCAGATAATGATTCTAATTCAGATAATGAAGGGTGTCATGATTTAAATGTCATAGGCCATGCGGTGACTGGAACTTCTCAGATCAGATCCTCTGTTGGAAACAGGGGCAACGATTCACTCATGGAGCAGTATAGTGTAGCAAAAAATGCTGGCGATAGTTTGTGTCTAAATCAGAATCCAGAACAGGACCAATCTCCTTCTGCACGTAACACTTCCCGTAAAATAGTGAATATTTCTGTTAATGTAAATACTTGGAAGCCGGAGCAGTATCAGGAACCAAGAGTGATTGCAGAATTTAATGGTCATAAAACTTTAGGCAATGAAACTGGAGGTCCCAGATCTAACATGCAACCGGTGAAGGAGAATACACAAGCGATGAAAATTAGTAATGGAAATGTAAACATTGCTCCTGATCTTCAGAAAGAGTCTATCAAGGCACACTGTACTACTGATGTAGATCTGATTGCATCTTGTGCATTCTCAGGTTCTAGTATTGCCGGTCGTCCTTTAGAAGATGTGGATTCCAGAACCATTTTTGTTAGCAATGTTCATTTTGCTGCTACTAAAGATGGCTTGTCTCGGCATTTTAATAAATTTGGGGAAGTGTTGAAAGTGATCATAGTCACTGATGCTGCAACTGGGCAGCCAAAAGGGGCAGCGTTGGTTGAATTCATGCTAATAGAAGCAGCAGATAATGCACTATCTCTAGATGGCACTTCTTTCATGTCACGAATTCTCAAGGTTGTAAAGAAAAGTGCCGCCCCTCAAGAATCTGCTCCAACCACAACATGGCCACGAGTTGTTAGGGGATCTTCATTTCCTACTGCTAGGTTTCCCAGACCACCCTTTGCAAGAGGTATGCCTGGTTCATTTAGACCTCGCCCCCCAATGAAACTGGGTGCAAGGAGCATGCAATGGAAGCGAGGTGCTCAGACTAATCCAGTGGACAATGCTTCATCAGTGAACACCGGCAATTTTACCATGCCTGCTACTCGCGGTCTCACCTACGTTAGAACACAATCTAAGCCAGAAGGCTTGGGTACGGGTACATCATAA 2109 0.4272 MGSVDRDDNRIFEANFTNDGAKKLGEIVKEKLKEFMGEYSDDTFVEYVIVLLRNGKSKEQAKSELDVFLADKSDAFVCWLWDHLHLNLALYVKPKKLQDEAPRRKLTSEIEAAVDSNSKLERGNSNKFSRTRRNKDWKGLVRGEAEARAPTISSSKVNIAHLDERVCRKFNHGPRSPSPKPESTGQRKRDRTDEKHRTKRDVASQVNGAASRRLLQFAVRDAVGTSRTSNLGKSMEPSLKRLRSVVSTSSGDSSLVEHYQHVQPTARVPNAMTTVIKAVAEAAEDVKSKSSGSVFDRLGCGVDSSADNSQLDYQQQEKSQSMHLQRTDYDGQFAAHTTMIEHETGFPSDSNSDNDSNSDNEGCHDLNVIGHAVTGTSQIRSSVGNRGNDSLMEQYSVAKNAGDSLCLNQNPEQDQSPSARNTSRKIVNISVNVNTWKPEQYQEPRVIAEFNGHKTLGNETGGPRSNMQPVKENTQAMKISNGNVNIAPDLQKESIKAHCTTDVDLIASCAFSGSSIAGRPLEDVDSRTIFVSNVHFAATKDGLSRHFNKFGEVLKVIIVTDAATGQPKGAALVEFMLIEAADNALSLDGTSFMSRILKVVKKSAAPQESAPTTTWPRVVRGSSFPTARFPRPPFARGMPGSFRPRPPMKLGARSMQWKRGAQTNPVDNASSVNTGNFTMPATRGLTYVRTQSKPEGLGTGTS 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00499 702 Pfam PWI domain 27 84 IPR002483 GO:0006397
Vifa2g00499 702 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 527 604 IPR000504 GO:0003723
Vifa2g00499 702 MobiDBLite consensus disorder prediction 169 205 - -
Vifa2g00499 702 MobiDBLite consensus disorder prediction 404 423 - -
Vifa2g00499 702 Gene3D - 488 611 IPR012677 -
Vifa2g00499 702 MobiDBLite consensus disorder prediction 182 202 - -
Vifa2g00499 702 MobiDBLite consensus disorder prediction 343 363 - -
Vifa2g00499 702 Gene3D PWI domain 6 91 - -
Vifa2g00499 702 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 2 663 IPR040366 GO:0008143|GO:0043488|GO:1900364
Vifa2g00499 702 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 529 597 IPR000504 GO:0003723
Vifa2g00499 702 SUPERFAMILY RNA-binding domain, RBD 520 602 IPR035979 GO:0003676
Vifa2g00499 702 MobiDBLite consensus disorder prediction 343 365 - -
Vifa2g00499 702 SMART rrm1_1 528 600 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00499 Vifa-Chr2 87863261 87871229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00499 503 606 C2H2 Transcription Factor Family AT2G19380 30.556 5.85e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00499 2 87863261 87871229 Vifa2g00499 2 87863261 87871229 ECH