Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00496 ATGTCCTCCAGGGTTTGCAAGTTCTATGCCCGTGGGGGATGTTTGAAAGGGGATCAATGTGATTTTTCTCATCAAAGAAAGGATTATCATCAAAAAAAGGAGACTCCAGTTGATAAACAGATTTGCTCCTATTATCAGAAAGGGTCCTGTGCTTATGGTAGTCGATGCAGATATAAGCATATCAAAGCTACTCAAGGATCATCTTCAGCATCTTTGGTTCCAAATTGTGCTTTGGCTCACGGTGTTAAACTAGCACCAAGTTGGGTTCCGAAGGTTACGAAAGTTCCGCCTCCACCTTGCAAGCACGGCGTAAGGAGTTTTCAACACAACCATCAGGACTCTACTGATGTTGGTGAATCCAGTAGTACTGGTTCTAGTGCTAGACTGAATGGACATTTGTTTTGTAAATTTGCCGCGGCAAACTGCCCCTTTGGACCCGGGTGTTCTCGTGTTCATGGAAATCAATGCTTATACTGTAGAAAATATTGCTTGCATCCTAGTGATAAAAAGGAAAAAGAAAATCATTTGAAGACTTGTGACAAAAAGGAAAAGTACGTTCTGGCTTTGAAAAATAGCGAAGAAATAGAATGCAATGTTTGTCTCGAGCGTGTCCTTTCCAAACCCAAACCATCGGAGCGTAAGTTTGGGTTGCTTCCAGAATGTGACCATGCTTTCTGTTTGTCATGTATCCGCAATTGGCGCAATAGTGCCCCAACCTCTGAAATGGAAACCGGTAATAATGTCAACACAGTTAGAACCTGCCCTGTTTGCCGCCAACTATCATATTTTGTCATTCCAAGTGGTATTTGGTATACTACAAAGGAAGAAAAACAGGAAATTATTGATAACTACAAGGCAAACTGCAGATTGATTGATTGCAAACATTTTGACTCTGGTAATGGGAATTGTCCATTTGGGGCTAGTTGTTTCTATAAGCATACAGTGAAGCCTGGCTCTTACACATGGATACACAACAGGCCACCACCTCAGCGTAAACAAAACAATTTCGATATGTATGACGTATTGGACATGCTCAGTGAAGTTGATCTATCAAGTGGAGAATTTTATTCCATCATGAGGGACTCAGAATTTTTCGATGGGATGGATCAATTCGAGATGATGGCTTTATCAGATTCTCTGGCTAGTGGTTCGGCTCCTCACTTAGGTCCTTTTGAGTCCGATGATGAGGGGGAAACCTTTGATTTTTTCCGAATGGCTGCAATGTCAGAGGCCCTAGATGATTTCGGCCCCGATGATTTCGGCCCTGATGATTTCGGCCCTGATGATTTCGACCTAGATGATTTGGATGACTTGGATCCTATGGAGGCAGCCTTGATATCAATGATGATGCATTCCCATATTGATGAAGATAGTGAGGATGAATATTAG 1389 0.4219 MSSRVCKFYARGGCLKGDQCDFSHQRKDYHQKKETPVDKQICSYYQKGSCAYGSRCRYKHIKATQGSSSASLVPNCALAHGVKLAPSWVPKVTKVPPPPCKHGVRSFQHNHQDSTDVGESSSTGSSARLNGHLFCKFAAANCPFGPGCSRVHGNQCLYCRKYCLHPSDKKEKENHLKTCDKKEKYVLALKNSEEIECNVCLERVLSKPKPSERKFGLLPECDHAFCLSCIRNWRNSAPTSEMETGNNVNTVRTCPVCRQLSYFVIPSGIWYTTKEEKQEIIDNYKANCRLIDCKHFDSGNGNCPFGASCFYKHTVKPGSYTWIHNRPPPQRKQNNFDMYDVLDMLSEVDLSSGEFYSIMRDSEFFDGMDQFEMMALSDSLASGSAPHLGPFESDDEGETFDFFRMAAMSEALDDFGPDDFGPDDFGPDDFDLDDLDDLDPMEAALISMMMHSHIDEDSEDEY 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00496 462 Pfam CCCH-type zinc finger 41 60 IPR041367 -
Vifa2g00496 462 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Vifa2g00496 462 Pfam RNA-binding, Nab2-type zinc finger 135 153 - -
Vifa2g00496 462 Pfam RNA-binding, Nab2-type zinc finger 292 313 - -
Vifa2g00496 462 Pfam zinc-RING finger domain 196 259 IPR001841 -
Vifa2g00496 462 Gene3D - 1 73 - -
Vifa2g00496 462 CDD RING-HC_MKRN 195 258 - -
Vifa2g00496 462 ProSiteProfiles Zinc finger RING-type profile. 197 258 IPR001841 -
Vifa2g00496 462 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Vifa2g00496 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 268 IPR013083 -
Vifa2g00496 462 ProSiteProfiles Zinc finger C3H1-type profile. 36 63 IPR000571 GO:0046872
Vifa2g00496 462 ProSitePatterns Zinc finger RING-type signature. 221 230 IPR017907 -
Vifa2g00496 462 PANTHER MAKORIN-RELATED 1 373 IPR045072 GO:0000209|GO:0061630
Vifa2g00496 462 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Vifa2g00496 462 SMART c3hfinal6 129 154 IPR000571 GO:0046872
Vifa2g00496 462 SMART c3hfinal6 37 62 IPR000571 GO:0046872
Vifa2g00496 462 SMART c3hfinal6 287 315 IPR000571 GO:0046872
Vifa2g00496 462 ProSiteProfiles Zinc finger C3H1-type profile. 287 316 IPR000571 GO:0046872
Vifa2g00496 462 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Vifa2g00496 462 SUPERFAMILY RING/U-box 186 264 - -
Vifa2g00496 462 SMART ring_2 197 257 IPR001841 -
Vifa2g00496 462 SUPERFAMILY CCCH zinc finger 36 60 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00496 Vifa-Chr2 87771768 87776110 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa2g00496 zf-RING_5 3e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00496 K15687 - gmx:100788886 597.045