Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00488 ATGGATGAAAATTTGTTAGCCACGACAAAAATATCTGTTGTTTGTAACAATGCTGGTGTTTATTTTAACAGTCGCTTATTTCGAGCTACGGGCTTACCAACTGAAGTTGTTTTCAAAGTTTTGGTTGAAAAGATGGGGTTTCCAGATATCAAGTCAAGGAACAAAACTCGCGACACGCAAGGTGCAGCAAACAACGTGATGGGTTGCAATATCGTGAAGCTAGGATGTAGTGAGTGGTGGAATAAAAGATCCAAAAGGGTAGCTACTTTGGAGTTTGATCGTGTTAGAAAGTCGATGAGTGTTATTGTTCGTGAACTAGATGGTCAACATCGGCTTCTTGTCAAGGGTGTTGTTGAGAGTTTATTGGAGCAAAGCTCGTTTATGCAACTTGCAGAGGGATCTCTTGTTCCAATAGATGATCAATGTAAGGGACTACTTTTTCAAAGACTCCATGAGATGAGTTCGAAGGGGTTGCGTTGCTTGGCATGTAAAGATGAGTTGGGAGAGTTTTCAAATTATTCCACAGACACTCATCATGCACACAAGAAATTGCTTGATCTAACACACTATTCATCCATTGAAAGTGATTTCATTTTTGTCGATGTTGTTGGTTTAAGAGAGCCTCCTAGAGAGGAAGTTTATAAAGCAATTGAGGATTGTAAGCAAACTGGTATTAAAGTTATGGTGATAGCTGGGGATAATAAGTCAACAGCCGAGGCAATTTGTACGAAAATCATACTTTTCTCTGGATATGCAGATCTTACAGATCAAAGTTTGACAGGTACATAA 789 0.3916 MDENLLATTKISVVCNNAGVYFNSRLFRATGLPTEVVFKVLVEKMGFPDIKSRNKTRDTQGAANNVMGCNIVKLGCSEWWNKRSKRVATLEFDRVRKSMSVIVRELDGQHRLLVKGVVESLLEQSSFMQLAEGSLVPIDDQCKGLLFQRLHEMSSKGLRCLACKDELGEFSNYSTDTHHAHKKLLDLTHYSSIESDFIFVDVVGLREPPREEVYKAIEDCKQTGIKVMVIAGDNKSTAEAICTKIILFSGYADLTDQSLTGT 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00488 262 Gene3D - 3 208 IPR023299 GO:0000166
Vifa2g00488 262 Gene3D - 209 261 IPR023214 -
Vifa2g00488 262 Pfam Cation transport ATPase (P-type) 14 127 - -
Vifa2g00488 262 PANTHER CALCIUM-TRANSPORTING ATPASE 3 250 - -
Vifa2g00488 262 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 3 205 IPR023299 GO:0000166
Vifa2g00488 262 SUPERFAMILY HAD-like 193 249 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00488 Vifa-Chr2 84811254 84812042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00488 1 261 Primary Pumps ATPases(2) AT4G00900 60.837 8.56e-104 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00488 K01537 - gmx:100792952 377.481