Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00481 ATGAGGAAACCTGATATGATCATGCCAAAAGAACACAACAACATTAACAAGACCAAGCTAAGGAAAGGTCTATGGTCACCTGAGGAAGATGACAAGTTGATAAGGTACATGATAACTAAAGGACAAGGCTGTTGGAGTGACATTGCTAGAAATGCTGGTCTTCTAAGATGTGGCAAAAGTTGTCGTCTTCGTTGGATTAATTACTTGAGACCCGATCTTAAACGCGGCGCCTTTTCGCCTCAAGAAGAAGAACTCATCATTCATTTCCACTCCATTCTTGGCAATAGATGGTCTCAGATTGCGGCGCGTCTTCCGGGTCGTACCGACAATGAAATAAAGAATTTTTGGAATTCTACATTGAAGAAGAGATTGAAAAACAACACTCCATCTCCAAACAGTAGTGATTTATCAGATCAACCAATAGATAATGTTTTTGATGTGAAGAATAATATAATGATGCCGATAAATGAACAAGAACTCATGACATTGTGCATGGATTCATCCTCATCAACTTCATCATCATCCATGCAATCCATGCACATGCATGCCATGGTTTTAGGTGAACAATTCGATCCATTTTCATTGTTGTCGAATAATTGTTATGACATGACGACAAGTTTTCATGTTCATGCTCATGACATGCCAGCATGTTTAACACAAGTTGGTAACATGGTTGATGATATTGGGCTTCATAGTGGGATTTTGGAGGATAATAAAATGGGGTTATTAGAAAATGATTTTGAACTTCTTCCACTAGAAAGTAGAATTGTCATTGAAGACAAGAGTGTCCCAATTGATGATCATCATAATATGAAAAGCCATATCAACCACTTCAATAATAGTTGCTTCAATAGCACTAATCATACCCAAAATTCTAATGTAGATGACTTGTTTGGATTTGGAAATCATGGCCAAGGAGAAAACTTAAGATTGGGAGAATGGGATTTGGAGGGTTTAATGCAAGACATATCCTATTTTCCTCCTCTTGATTTCTAA 996 0.3745 MRKPDMIMPKEHNNINKTKLRKGLWSPEEDDKLIRYMITKGQGCWSDIARNAGLLRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKNNTPSPNSSDLSDQPIDNVFDVKNNIMMPINEQELMTLCMDSSSSTSSSSMQSMHMHAMVLGEQFDPFSLLSNNCYDMTTSFHVHAHDMPACLTQVGNMVDDIGLHSGILEDNKMGLLENDFELLPLESRIVIEDKSVPIDDHHNMKSHINHFNNSCFNSTNHTQNSNVDDLFGFGNHGQGENLRLGEWDLEGLMQDISYFPPLDF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00481 331 CDD SANT 77 120 IPR001005 -
Vifa2g00481 331 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Vifa2g00481 331 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Vifa2g00481 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Vifa2g00481 331 FunFam Transcription factor MYB46 76 143 - -
Vifa2g00481 331 SMART sant 74 122 IPR001005 -
Vifa2g00481 331 SMART sant 21 71 IPR001005 -
Vifa2g00481 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Vifa2g00481 331 CDD SANT 25 69 IPR001005 -
Vifa2g00481 331 FunFam MYB transcription factor 19 75 - -
Vifa2g00481 331 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Vifa2g00481 331 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Vifa2g00481 331 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Vifa2g00481 331 PANTHER MYB DOMAIN PROTEIN 55 12 285 - -
Vifa2g00481 331 Gene3D - 19 75 - -
Vifa2g00481 331 Gene3D - 76 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00481 Vifa-Chr2 82551547 82553125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00481 1 331 MYB Transcription Factor Family AT3G08500 46.322 3.16e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa2g00481 Myb_DNA-binding 1.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00481 K09422 - gmx:100813660 416.387