Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00476 ATGTTTGTGGGCTTGTTGTTTGAACTGGCAGGATGTTACAGTTTGGAGTTTTATGGTTCTGTGTTTGAAACAGACACAGAGACGTCAACTCCGACCACCACGCAACACCTCCACAACAAACCACCGTTCGTCAGGCCGATTTTTCTGTTACTGGTGGCGATAGCACGAGAATTTTCCGCAACCTTGATCTCTTGCTCGAAGCTTCACACTTCTCTTTTTCAACGTCTCTTCCTTCGTAGAAAGACTTCCAAGATTTTGGTCAAAGGTTTAACATTTTCTACTACAGAGGAGAAATTAGCTGAAGCTTTTTCTCAATACGGAAATGTTCTCAAAGCTGATATAGTATTGAATAAAGCCAAGAATAGATCCAAAGGTTTTGGATATGTGACTTTTTCAGACGAGGAAGAAGCCCGCAAAGCCCAGATTGACATGAATGGAAAGATATTACACGGACGTGTCTTGTCTGTAGTCATGGGTCGTCCTAACGACCCGAAGAAAACTTACAAGCACAAAACTGAAAATACAAATGCTGATAATGATGATGTGCGTATCAATTGA 558 0.414 MFVGLLFELAGCYSLEFYGSVFETDTETSTPTTTQHLHNKPPFVRPIFLLLVAIAREFSATLISCSKLHTSLFQRLFLRRKTSKILVKGLTFSTTEEKLAEAFSQYGNVLKADIVLNKAKNRSKGFGYVTFSDEEEARKAQIDMNGKILHGRVLSVVMGRPNDPKKTYKHKTENTNADNDDVRIN 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00476 185 MobiDBLite consensus disorder prediction 160 185 - -
Vifa2g00476 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 154 IPR000504 GO:0003723
Vifa2g00476 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 161 IPR000504 GO:0003723
Vifa2g00476 185 MobiDBLite consensus disorder prediction 163 185 - -
Vifa2g00476 185 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 80 166 - -
Vifa2g00476 185 SMART rrm1_1 84 157 IPR000504 GO:0003723
Vifa2g00476 185 Gene3D - 77 183 IPR012677 -
Vifa2g00476 185 SUPERFAMILY RNA-binding domain, RBD 81 166 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00476 Vifa-Chr2 80665157 80670638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00476 77 168 Eukaryotic Initiation Factors Gene Family AT1G22760 33.696 1.12e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00476 - K13195 gmx:100527061 143.665