Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00474 ATGGATGATTCTGTGAGAGTGATATCCACAAGTACAATTCAAGCACCAAGTGACAACAACATCAATGGTAACTCAACTGACTTTCTGAAAATTCATTTAACACCATGGGATCTCCAATTCCTCCCAATGGAAACCATTCAAAAAGGCCTTCTTTTCCACCACCAAACCAATACTGACCCATCATCTTTAAAAAACCAAATCCATCATATGAAACAAACCCTTTCCACCACTCTTTCCTTCTTTCCACCCCTCGCCGGCCGTCTCGTAATCACTCAACACCAACAACAAGAAGAAGAAAACAACAGTGCAGCATCATGTTACATCATCTGCAACAACCTTGGTGCGCTCTTTGTCCATGCCACAGCACAAAACACAACTGTTTCTGATATCCTTCAACCAGAAAACTATATTGTACCTCCCATTGTCTACTCTTTCTTCCCTCTCAACGGTGTCAAAAACTGGGAAGCAACTTCCCACCCGATTCTTGCTGTCCAAGTAACAGACTTACTTGACGGCTTATTCATTGGCTTCTCAATCAACCACTCAGTTATAGACGGAAAGTCGTTTTGGCATTTCATCAATTCTTGGTCTCAAATCTCACGAGGAGTTTCTTTAAACAAACATCCTTCACCTTCACCTTCACCTTCACTTAAACGCTGGTTTCCAAACGACATTCATCAACTTCCCGTACATTTCCCTTTCACAACTGATCAATTCATCCAAACCTCCAAACCAAACAACTTAGGTGAAAGAGTATTCCATTTCACGAAGGAGAAAATCGCGGAACTGAAATCAAAAGCAAAGGCAGAAACTGATATGAATATTACAATCTCTTCACTTCAAGCGGTATTATCTCATGTTTTGCGTTCTGTGGTTCGTTGCGAAAGACTTGATCCACAACAAGACGTTCTTTTCATATTGCTGATAGGAGTTAGGCCAAGGATGATTCCACCGCTCGAAGATGAATATTTCGGGAACGCGGTGTTGCTTTGTGATTTTACAATGAAAGCATGGGAGATTCTAGAAGGTGGTACTGGAAAAATCGAATTGGAGATGAACAAGATGATTTCTGTAAATTCTGATAATGAGAAAATAAGAAACAGTTACGAGTGTTGGTTGAGAAACCCGAAGTTGCTTACACGTGGTAACTTCACTCGTTGTTATACATTGACAACAAGCAGTTCTCCGAGCTTTGATGTTTATGGTAATGATTTCGGTTGGGGAAAGCCTGTGGCAGTTCGATCCGGGGGTGCGAATAAAAGAAATGGAAGGATTAGTGTGTTTACTGGGGCAGAAGAAGGAAGTATAGACATTTCACTGACTCTTCAGTATGAGATCTTGGAGGCCCTGGGAAATGACATGAGTTCATGCATTAATGTAAATGGCCGCGATCACGTTGCGGTCGCTTAA 1410 0.4149 MDDSVRVISTSTIQAPSDNNINGNSTDFLKIHLTPWDLQFLPMETIQKGLLFHHQTNTDPSSLKNQIHHMKQTLSTTLSFFPPLAGRLVITQHQQQEEENNSAASCYIICNNLGALFVHATAQNTTVSDILQPENYIVPPIVYSFFPLNGVKNWEATSHPILAVQVTDLLDGLFIGFSINHSVIDGKSFWHFINSWSQISRGVSLNKHPSPSPSPSLKRWFPNDIHQLPVHFPFTTDQFIQTSKPNNLGERVFHFTKEKIAELKSKAKAETDMNITISSLQAVLSHVLRSVVRCERLDPQQDVLFILLIGVRPRMIPPLEDEYFGNAVLLCDFTMKAWEILEGGTGKIELEMNKMISVNSDNEKIRNSYECWLRNPKLLTRGNFTRCYTLTTSSSPSFDVYGNDFGWGKPVAVRSGGANKRNGRISVFTGAEEGSIDISLTLQYEILEALGNDMSSCINVNGRDHVAVA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00474 469 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 7 454 - -
Vifa2g00474 469 Gene3D - 239 452 IPR023213 -
Vifa2g00474 469 Gene3D - 4 238 IPR023213 -
Vifa2g00474 469 Pfam Transferase family 30 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00474 Vifa-Chr2 80654621 80656030 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00474 70 445 Monolignol Biosynthesis Gene Families AT5G48930 26.835 8.87e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00474 - - gmx:100500257 481.1