Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00472 ATGTGCAGTGGTCCTGACAAATCAAAATCTCGTTCAACTTCTTCATCTTCATCTGTGGAAGAAGTTTGCTTGAATTTGCTTCTAACAATGATTTTGAAGAATTTAAGAACCCCTTTAATGGTGGCTGCATCCTATGGAAGCATTGATATTCTTAAGCTTGTACTCTCATGTCCAGAGGCTGATGTAAATTTTGCTTGCGGTAATGATAAAAGCACTGCTCTTCACTGTGCTGCTTCAGGTGGTTCGGTTAATGCAGTTGAAGCTGTTAAACTGCTTTTATCCGCTGGTGCGAATATCAATTGCATGGATGCTAATGGGAACCGTCCAGTTGATGTTATTGTTGTTCCACCTAAGCCTGAAGGTGTGAAAACAATTCTTGAAGAACTACTCGCTGATAGTGATTCTGACAGCTCTGTTGATGGTTGTTCTCTTCCACTGTCTGTTAATTCATCAAGTCCTCGTTCAGCTGCCCCTTTATCGTCAACTGAAAATGGATCTCCATCCTCTCCCGTGGCTACAAAGTTTTCTGATGCAGCTGTTAACTCGGCCTCAGAAAAAAAGGAATATCCAATCGATCCATCACTTCCTGATATAAAAAACAGCATATATGCCACGGATGAATTTCGCATGTTTTCTTTCAAGGTTCGCCCTTGTTCCCGTGCATATTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCTAGAAGGAGAGACCCCAGAAAGTTTCATTACAGCTGTGTGCCATGCCCTGATTTTAGAAAAGGGGCTTGCAGACGCGGGGATATGTGTGAATATGCTCACGGAGTATTCGAGTGCTGGCTACACCCTGCTCAGTATCGGACAAGGCTCTGCAAAGATGGTACTAGTTGTAACCGAAGGGTGTGCTTTTTCGCTCACTTACCTGAAGAGCTGCGTCCTTTGTATGTGTCCACTGGATCTGCTGTTCCTTCACCCCGGTCAGCTGCATCTGCCCCTAATGTCATGGACATGGCTGCTGCTATGAGCCTTTTTCCTGGTTCACCATCATCAATGTCTCCTATGTCTCCATCTCCCTTTGCACAGCCAATATCTCCATCTGGAAATGGCATCTCTCACTCAAATAATCCTTGGCCACAGCCAAATGTGCCTGCACTTCACTTACCTGGAAGCAATATTCAAACTAGTCGTTTGAGATCTTCTCTTTGTGCCCGAGATATGCCACTTGAAGACTTCAACAATATGATGCAAGACTTCGATGGTCAGCAGCACATACTAAATGACATTAACTGCTTCTCACAGCCTCGTCTTGGTGCTATATCAGTGAGTCGATCTGGTCGGTCTAAAACACTAACTCCATCAAATCTTGAGGATCTATTTTCTGCTGAAGTTTCTTCATCTCCTCGGTATTCTGACCCAGCAGCAGCTTCTGTATTTTCCCCAACACACAAATCCGCTGTCTTCAACCAGTTTCAACAGCTCCAAAGTTCACTATCACCCATAAATACAAATGTCATGTCACCTAAGAATGTTGAGCATCCTCTATTCCACCAGGCTTCATATGGTGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGCATGGAACCCCTCTCTCCAATGAATTCTCGATTGTCCGCATTTGCTCAGCGTGAGAAACAGCAGCAACAGATGCGGAGCCTCAGTTCAAGAGAACTTGGTGCTAACAATCCCGTCTCGGCTGTCGGATCTCCAGTTAACTCCTGGTCTAAGTGGGGATCCCCTAATGGAAAAGCAGATTGGTCAGTAAATGGAAACGACTTTGGTCGATCTCAAAGATCCACACCATTCGAGCATGGAAACAACGGAGAAGAGCCTGATCTATCTTGGGTCCAATCTCTTGTCAAGGAATCTCCACCCGAGATAAAAGAGAAACTTGCAGTTTCTGGCCCTATTGCATCTGCTGAACTGAAACCCAATCCTCAAGGAGAGTCTATCGATCATTCAGTTTTAGGAGCTTGGCTGGAGCAAATGCAGCTGGATCAACTTGTAGTCTAG 2022 0.4486 MCSGPDKSKSRSTSSSSSVEEVCLNLLLTMILKNLRTPLMVAASYGSIDILKLVLSCPEADVNFACGNDKSTALHCAASGGSVNAVEAVKLLLSAGANINCMDANGNRPVDVIVVPPKPEGVKTILEELLADSDSDSSVDGCSLPLSVNSSSPRSAAPLSSTENGSPSSPVATKFSDAAVNSASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHLPEELRPLYVSTGSAVPSPRSAASAPNVMDMAAAMSLFPGSPSSMSPMSPSPFAQPISPSGNGISHSNNPWPQPNVPALHLPGSNIQTSRLRSSLCARDMPLEDFNNMMQDFDGQQHILNDINCFSQPRLGAISVSRSGRSKTLTPSNLEDLFSAEVSSSPRYSDPAAASVFSPTHKSAVFNQFQQLQSSLSPINTNVMSPKNVEHPLFHQASYGVSSPGRMSPRSMEPLSPMNSRLSAFAQREKQQQQMRSLSSRELGANNPVSAVGSPVNSWSKWGSPNGKADWSVNGNDFGRSQRSTPFEHGNNGEEPDLSWVQSLVKESPPEIKEKLAVSGPIASAELKPNPQGESIDHSVLGAWLEQMQLDQLVV 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00472 673 Pfam Ankyrin repeats (3 copies) 23 103 IPR002110 GO:0005515
Vifa2g00472 673 ProSiteProfiles Zinc finger C3H1-type profile. 252 274 IPR000571 GO:0046872
Vifa2g00472 673 ProSiteProfiles Ankyrin repeat region circular profile. 69 103 - -
Vifa2g00472 673 MobiDBLite consensus disorder prediction 136 173 - -
Vifa2g00472 673 SMART c3hfinal6 247 273 IPR000571 GO:0046872
Vifa2g00472 673 SMART c3hfinal6 282 305 IPR000571 GO:0046872
Vifa2g00472 673 Gene3D - 248 310 - -
Vifa2g00472 673 ProSiteProfiles Ankyrin repeat profile. 69 104 IPR002110 GO:0005515
Vifa2g00472 673 MobiDBLite consensus disorder prediction 134 173 - -
Vifa2g00472 673 SUPERFAMILY Ankyrin repeat 33 124 IPR036770 -
Vifa2g00472 673 FunFam Zinc finger CCCH domain-containing protein 66 205 273 - -
Vifa2g00472 673 MobiDBLite consensus disorder prediction 545 588 - -
Vifa2g00472 673 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 252 272 IPR000571 GO:0046872
Vifa2g00472 673 SMART ANK_2a 34 64 IPR002110 GO:0005515
Vifa2g00472 673 SMART ANK_2a 69 101 IPR002110 GO:0005515
Vifa2g00472 673 PANTHER UNKEMPT FAMILY MEMBER 19 626 IPR045234 -
Vifa2g00472 673 Gene3D - 6 151 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00472 Vifa-Chr2 79643399 79645573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00472 30 670 C2H2 Transcription Factor Family AT5G12850 55.287 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa2g00472 Ank_2 4.5e-11 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00472 - - gmx:100813725 1031.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00472 2 79643399 79645573 Vifa2g00472 2 79643399 79645573 ECH