Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00470 ATGGATGATTCTGTGAGAGTAATCTCCACGAGTACAATTCAAGCACCAAGTGACAACAACATCAATGGAAACTCAACTGACTTTCAGAAAATCCATTTAACATCATGGGATCTCCAATTCCTCCCACTTGAAGCCATTCAAAAAGGCCTTCTTTTCCACCACACCATTGATCCATCAAAAAACCAAATCCATCATTTGAAACAAACCCTTTCCACCACTCTTTCCTTCTTTCCACCCCTCGCCGGCCGTCTTGTAATCACTCAACACAAAGAAGAACACAACACCACCACCTCATCATCATGTTTCATCCTTTGCAACAATGCTGGTTCACTCTTTGTCCACGCCAAAGCAGAAAAGACTACCGTTTCCGACATCCTTCGACCCAACAACCACTTTGTACCACCCATTGTGTACTCTTTCTTCCCCTTCAACGGCTTCAAAAACTATGAAGACACTCCCCACCCAATTCTTGCTGTCCAAGTAACCGAGTTACTCGACGGTCTCTTCATAGGTTTCACAATCAACCACCTTGCATCAGACGGAAAGTCGTTTTGGCATTTCATCAATTCTTGGTCTCAAATCTCACGAGGAGTTTCTTTAAACAAACATCCTTCACCTTCACCTTCACTTAAACGCTGGTTTCCAAACGACATTCATCAACTTCCCATACGTTTCCCTTTCGCAACTGATCAATTCATCCAAACCTCCAAACCAAACAACTTAGGTGAAAGAGTATTCCATTTCACGAAGGAGAAAATCGCGGAACTGAAATCAAAAGCAAACGCAGAAACTGATATGAATATTACAATCTCTTCACTTCAAGCGGTATTATCTCACGTTTTGCGTTCTGTGGTTCGTTGCGAAAGACTTGATCCACAACAAGACGTTCTTTATGGTTTACTGATTGGGGTTAGAGCAAAGATGATTCCTCCGCTTGAAGATGAATATTTCGGAAATGCAATTTCAGTTTGTGGTTTTACGATGAAAGCAGGAGAAATTCTTGATAGTGGGATTGGAATGGTAGCATTAGAGATGAACAAGACTATTTGTCTAAATTCGGGTGATGAGAAAATAAGAAATAGTTACGAGTGTTGGCTGAGAAAAGCAAAGATGTTTACAGGTGGGAGTGATTTGACTCGTTGTTATACATTGACAACAAGCAGTTCTCCGAGGTTTGATGTTTATGGTAATGATTTCGGTTGGGGAAAGCCTGTGGGAGTTCGATGCGGGGGTGCGAATAAAAGAAATGGAAGGATTACTGTGTTTGCTGGGGCGGAAGAAGGCAGTATAGATGTTTTACCGTGTCTTCCTTATGAGATCTTGGAGGCCATGGGAAATGATACTGAGTTCATGCATTAA 1359 0.418 MDDSVRVISTSTIQAPSDNNINGNSTDFQKIHLTSWDLQFLPLEAIQKGLLFHHTIDPSKNQIHHLKQTLSTTLSFFPPLAGRLVITQHKEEHNTTTSSSCFILCNNAGSLFVHAKAEKTTVSDILRPNNHFVPPIVYSFFPFNGFKNYEDTPHPILAVQVTELLDGLFIGFTINHLASDGKSFWHFINSWSQISRGVSLNKHPSPSPSLKRWFPNDIHQLPIRFPFATDQFIQTSKPNNLGERVFHFTKEKIAELKSKANAETDMNITISSLQAVLSHVLRSVVRCERLDPQQDVLYGLLIGVRAKMIPPLEDEYFGNAISVCGFTMKAGEILDSGIGMVALEMNKTICLNSGDEKIRNSYECWLRKAKMFTGGSDLTRCYTLTTSSSPRFDVYGNDFGWGKPVGVRCGGANKRNGRITVFAGAEEGSIDVLPCLPYEILEAMGNDTEFMH 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00470 452 Gene3D - 237 447 IPR023213 -
Vifa2g00470 452 Gene3D - 3 220 IPR023213 -
Vifa2g00470 452 Pfam Transferase family 27 451 - -
Vifa2g00470 452 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00470 Vifa-Chr2 79208779 79210137 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00470 66 439 Monolignol Biosynthesis Gene Families AT5G48930 25.823 1.10e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00470 - - gmx:100500257 475.707