Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00464 ATGGAAGCTGCAGTTATCGACGCCGGCTCCAGTCTCCTCAAAGCCGGTTTCGCAATTCCCGATCAAACTCCCGCCATGATTATTCCTAGTCAGATGAAACGAATGGTTGATGATAAAGGATCGGTGAGTGATAACGGTAATGGTCAGTTAGTGGTGGATGATGTTGCGGTGGAGCCGGTGGTGAGAGGTTATGTTAGAGATTGGGATGCTATGGAGGATTTGTTGAATTATGTTTTGTACTCTGGTCTTGGATGGGAGATTGGGAATGAAGGTCAAATTCTGTTTACTGATCCACTTTGTACCCCTAAGGCTAACAAAGAACAGTTAGTGCAACTGATGTTTGAAACATTCAACATATCAGGGTTTTATGCCTCGGAGCAGGCAGTGTTGTCACTCTATGCTGTGGGAAGGATCTCTGGATGCACGGTTGATATTGGTCATGGAAAAATAGATATTGCTCCAGTAATTGAGGGTGCGGTTAACCACATTGCCTCGAGAAGATTTGAGTTTGGAGGTACTGATCTAACTAATTATCTGGCTCAAGAACTAGGCAAATCTAATCCGCAAGTGAATATCAGTCTGTCTGATGTTGAGAAAATAAAACAGCTATACTCATGTTGTGCTGAAGACGACTTCGCTTATCTGAAGACCAAAGATTATTGTCCTGTGGAGACACATACCCTTCCTGATGGACAGATGATAACAATTGGAAGAGAAAGATATACAGTTGGTGAAGCTTTATTCCAGCCAAGTCTATTGGGTTTAGAAGCTCATGGCATTGTAGAGCAGCTTGTCCGTACTATTTCAACAGTGACATCTGATAATCATCGGCAACTTCTGGAAAATACTGTGGTTTGTGGTGGCACTTCTTCTATGACTGGTTTTGAAGATAGATTTCAAAAGGAATCTTTGCTAAGTTCATCTGCTGTTCGACCTACCTTGGTTAAGCCTCCAGAATATATGCCTGAAAATTTAACCATGTATTCTGCATGGGTGGGAGGTGCTATACTCGCTAAAGTAGTTTTTCCTCAAAATCAGCATGTAACTAAGGCAGATTATGACGAAAATGGACCTTCCATTGTTCACCGGAAATGCTTCTGA 1101 0.4223 MEAAVIDAGSSLLKAGFAIPDQTPAMIIPSQMKRMVDDKGSVSDNGNGQLVVDDVAVEPVVRGYVRDWDAMEDLLNYVLYSGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVNHIASRRFEFGGTDLTNYLAQELGKSNPQVNISLSDVEKIKQLYSCCAEDDFAYLKTKDYCPVETHTLPDGQMITIGRERYTVGEALFQPSLLGLEAHGIVEQLVRTISTVTSDNHRQLLENTVVCGGTSSMTGFEDRFQKESLLSSSAVRPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHVTKADYDENGPSIVHRKCF 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00464 366 Gene3D - 5 360 - -
Vifa2g00464 366 Gene3D Actin; Chain A, domain 4 170 257 - -
Vifa2g00464 366 SMART actin_3 1 366 IPR004000 -
Vifa2g00464 366 Pfam Actin 2 366 IPR004000 -
Vifa2g00464 366 FunFam Actin-related protein 7 4 132 - -
Vifa2g00464 366 SUPERFAMILY Actin-like ATPase domain 2 143 IPR043129 -
Vifa2g00464 366 SUPERFAMILY Actin-like ATPase domain 136 366 IPR043129 -
Vifa2g00464 366 FunFam Actin-related protein 7 170 257 - -
Vifa2g00464 366 PRINTS Actin signature 105 118 IPR004000 -
Vifa2g00464 366 PRINTS Actin signature 130 149 IPR004000 -
Vifa2g00464 366 PRINTS Actin signature 23 32 IPR004000 -
Vifa2g00464 366 PRINTS Actin signature 222 238 IPR004000 -
Vifa2g00464 366 Gene3D - 128 329 - -
Vifa2g00464 366 CDD NBD_sugar-kinase_HSP70_actin 4 171 - -
Vifa2g00464 366 PANTHER ACTIN 4 359 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00464 Vifa-Chr2 78487355 78492621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00464 1 366 Cytoskeleton Gene Families AT3G12110 37.368 2.36e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00464 K16615 - gmx:100794153 655.595