Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00459 ATGATTAGCACTTCGACGCCAAAGCGTAAAAAGTTGTCATTATCGAGTGAGGGTGATGTTGGCAAAAGGCGAAAGCGTAGCAGGTCTGTATTACCCGTGGAAGAAGAAGAAGGAGAAGGTACTCTAGAGAAAGGTAGCGGGTCATTATTATCAAGGGAGGAAGCTGATCAAAGAGATAACGCGGGAGGAGGAGAAGTTGCTCTAACGAAAGGTCCGTGGACAAAGGAAGAGGATGAAATTTTGGTGGATCATATTAAGAAGTATGGAGAGGGAAACTGGAATGGAGTCCAGAAGAATTCGGGACTTGCTCGCGATGGTAAAAGTTGTCGTCTGCGATGGGCGAATCACTTGCGGCCAGGACTGAAAAAGAGTGCATTTACTGCTGAAGAAGAACGCCTAATCCTTGAGTTCCACTTTCGGAAGGGAAGCAAGTGGTCTCAAATGGCTGCAATGTTGCCGGGACGAACAGATAATGAGATAAAGAACTTTTGGTACGCGAGATATAGGAAACAGCAACGACTTGGCTTACCAATCTATCCTAACGAGATAACATCCAAATATTCGTCAAATGGCAGTCAAGAAAATGCTGACACATTGGCAAATGAATCCAGCCAGCGTGATGAAACAGAAAACTTCAACTTGGATATACCTGACTTGGACCTTAAAAATTTCAGATTCCGCCCAGATATGTTGCCGCCAAATTTAGGTACACAAGATTACAGACCAACAAGTGACTTGCTTGGACGGTGCTCAGATTCGTATCATAATACCTTACCCATGCGTAGGGCAGCAGTAGTGCGGTGCAGATATTTAACCAGTAGCAATAGTGCTGCTGTCCCGGAAGTATTTGATCAGTATGGCAAATATCCTATGTTGTCTACTCCATGTGATCCGATTCTTAACACATGCCTTCTTCATGGATATGATAACTGTATAACTGGTTTTCATGCCGCGCCTAATATTTCTTCTTCTGAGCCCATATATGGGCCCATGAGTTTTGAGCTCCCTTCATTCCAAAATTCACAGACTCAATGGTCTACCTGGAGCGGCATGCATATGCCGCCACTTTCCTCATTTGAGCCTGTTGACACGCCGGTTCAGGCTCCTCCGATTGAGCCTTGTCTGCCAGTTCCAGCTTCCCTGGGTTGCAGTCATTTAATTGATTCATCAGTATACCACAATTCAAATCAAAATTTGAAAGGCCCGAGTATTGATTCATTACAAGCAAATGCTGATGGCACGGCTCCCAATGAAGCAGACATTATTAGTACACAATGGAATGGACTAGATTATGATCAGCCTGCTGCTTTAACTACTCACCCCCAAATAAACTTCTTAAGATGGGCCTGCCACCCAAGAAACTTCTTAAGATGGCTCTGCTCAGAAATTGAAACCCCTCAGGATTATGATATTAACGGTGGTGCATTGAATGATCAGCTTCCAGCTTATCGTTCTTTTGACAAACAAGATAATTTGAATCAGAAATATGTGGTGCTACCAGATGCTGTGCTTGACTCTAGCTGGCATTGA 1530 0.4399 MISTSTPKRKKLSLSSEGDVGKRRKRSRSVLPVEEEEGEGTLEKGSGSLLSREEADQRDNAGGGEVALTKGPWTKEEDEILVDHIKKYGEGNWNGVQKNSGLARDGKSCRLRWANHLRPGLKKSAFTAEEERLILEFHFRKGSKWSQMAAMLPGRTDNEIKNFWYARYRKQQRLGLPIYPNEITSKYSSNGSQENADTLANESSQRDETENFNLDIPDLDLKNFRFRPDMLPPNLGTQDYRPTSDLLGRCSDSYHNTLPMRRAAVVRCRYLTSSNSAAVPEVFDQYGKYPMLSTPCDPILNTCLLHGYDNCITGFHAAPNISSSEPIYGPMSFELPSFQNSQTQWSTWSGMHMPPLSSFEPVDTPVQAPPIEPCLPVPASLGCSHLIDSSVYHNSNQNLKGPSIDSLQANADGTAPNEADIISTQWNGLDYDQPAALTTHPQINFLRWACHPRNFLRWLCSEIETPQDYDINGGALNDQLPAYRSFDKQDNLNQKYVVLPDAVLDSSWH 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00459 509 SMART sant 122 170 IPR001005 -
Vifa2g00459 509 SMART sant 69 119 IPR001005 -
Vifa2g00459 509 FunFam MYB-related transcription factor 69 122 - -
Vifa2g00459 509 CDD SANT 72 117 IPR001005 -
Vifa2g00459 509 CDD SANT 125 165 IPR001005 -
Vifa2g00459 509 Gene3D - 124 171 - -
Vifa2g00459 509 MobiDBLite consensus disorder prediction 12 42 - -
Vifa2g00459 509 ProSiteProfiles Myb-like domain profile. 65 117 IPR001005 -
Vifa2g00459 509 Pfam Myb-like DNA-binding domain 73 132 - -
Vifa2g00459 509 ProSiteProfiles Myb-like domain profile. 118 168 IPR001005 -
Vifa2g00459 509 MobiDBLite consensus disorder prediction 185 209 - -
Vifa2g00459 509 MobiDBLite consensus disorder prediction 1 70 - -
Vifa2g00459 509 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 122 172 IPR017930 -
Vifa2g00459 509 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 56 411 - -
Vifa2g00459 509 Gene3D - 69 122 - -
Vifa2g00459 509 SUPERFAMILY Homeodomain-like 68 164 IPR009057 -
Vifa2g00459 509 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 121 IPR017930 -
Vifa2g00459 509 MobiDBLite consensus disorder prediction 185 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00459 Vifa-Chr2 78297770 78299746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00459 67 370 MYB Transcription Factor Family AT5G06100 39.329 6.95e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa2g00459 Myb_DNA-bind_6 3.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00459 K09422 - psat:127085601 580.867