Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00458 ATGAAGGTTGAAGAAGACGAAGGTAACATGTTGGTTGATGCTGTTGGAAGGAGTATTGAAGATGGTTACAATGAAAATGCATATGATTATCAAGATGAATGGGGCTCTTATTGGGACGATGGAATGGATATTGAAACAGAAGAAGAAGATAATGAATTAATAAGAAGTGTTGAAGATTATCATCGTGAAAATCCTTATGGAGATAATAGATTCGTTATTGGAGTTGAAAGTGATGAAGACGAATGGAACTATGGTTGGGGAGAGGGCATAGAGATTGAAGAAGAAGATATTAGGTTTGTTCCTGCGGCTAAGTCGTGTATTGAGGGATTCAAGACGGTAACACTTGAAGAAGTAGAAAAGTGTACTATTTGTCTCGAAGATTTTAATGTTGGTGTCTGTCTCCCATGTTCGCATATGTTTCATATGAATTGTATTCAAGATTGGTTGAATATAGGCAATTTTTGTCCTTTGTGTAGGTTTCAATTGCCTACTAATAACACAAGTGAATAA 510 0.3588 MKVEEDEGNMLVDAVGRSIEDGYNENAYDYQDEWGSYWDDGMDIETEEEDNELIRSVEDYHRENPYGDNRFVIGVESDEDEWNYGWGEGIEIEEEDIRFVPAAKSCIEGFKTVTLEEVEKCTICLEDFNVGVCLPCSHMFHMNCIQDWLNIGNFCPLCRFQLPTNNTSE 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00458 169 SMART ring_2 121 158 IPR001841 -
Vifa2g00458 169 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 57 163 - -
Vifa2g00458 169 ProSiteProfiles Zinc finger RING-type profile. 121 159 IPR001841 -
Vifa2g00458 169 Pfam Ring finger domain 120 159 IPR001841 -
Vifa2g00458 169 SUPERFAMILY RING/U-box 120 164 - -
Vifa2g00458 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 169 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00458 Vifa-Chr2 78204376 78204885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00458 101 166 C3H Transcription Factor Family AT5G01980 41.892 4.50e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00458 - - psat:127081469 171.785