Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00457 ATGGATGAATATGATTGTAAGGCATATCCACATATGACTTTGATCGACTGCGATGCATCATACGACAGCGATTCGTGTTTAGATATAGAATTCGATTACACAATTGTTTGTGTTCCGAGTAATGAAATGATTCCGAATTTATCATCAAGTGAAACTAAATGTCATGTTTTTTCTTATGTGTCTGAAGATAAAGTGATCCATAAAGATACAATTACATCATGGCTTTCTGAAGTAGGTGCTCCTGAAGAAGCTTTTAACATGGTGGCAGAAGACATTTTGCAATGTGTTAGTGAGATGGGTAATGGAATATGTAAGAACTCGAGGGGTCTTTCTATTCGAGTTGATTTATCAGTCTCTCGTGGTTGTAAAGAGGAGGAAGAAGATGAAGAGACCAATTGTTTGGATGTGAATGAAGAGGAAGTGGAAGTGAAAGTCGAAGAAGATGAAGATAATGCGTTGGTTCATCCTGTTACAAGGACTATTGAAGATAGCCATGATAATGATGAATGGAAGTATAGATGGGACGAGGAGGAAATGGAGATTGAAGAACAAGAAGATAATGAGTTGACTCCAACTGATACAAGGTCTGCTGAAGATGATCACGGTGAAAACGATTATGGAGATGAACGGAACTCTTATTGGGAAGAGGATATGGAAATCGAAGAAGATAATACATCGGTTATTGAACTTGAAATTGATCGAGACAATAGATCGGTTATTGAACTTGAAATTGACCGAGATAATAGATCGGTTATTGAACTTGAAATTGGTCGAGATAATAGATCGGTTATTGAACTTGAAATTGGTCGAGATAATAGATCGGTTATTGAACTCGAAATTGGTCGAGATAATAGATCGGTTATTGAACTCGAAATTGGTCGAGATAATAGATCGGTTATTGAACTCGAAATTGGTCGAGATAATAGATCGGTTATTGAACTCGAAAGTAATGGAGATAATCGATCGGTTATTGAACTCGAAAGTAATGGAGATAATAGATCGGTTATTGAAGTTGAAAGTGATGGAGATAATAGATCGGTTATTGAACTTGAAAGTGATGGAGATAATAGATCGGTTATTGAAGTTGAAAGTGATGAAGATGAATGGAACTATGGTTGGGAAGAGATGATAGGAATCGAAGAAGATATTAGGTTTATTCCTGCGGCTAAGTCAGGTATTGAGGGATTGAAGATGGTAACAGTCGAAGAAGCGGGAAAATGTCCTATTTGTTTCGAAGATTTTAATGTTGGTGTCTGTATGCCATGTTCGCATACGTTTCATATGAATTGTATTCAGGATTGGTTGAATGTAGGCAACTCTTGCCCTTTATGTAGATTTCAGCTACCTACTAGTAGCACAGATGAATAA 1368 0.3684 MDEYDCKAYPHMTLIDCDASYDSDSCLDIEFDYTIVCVPSNEMIPNLSSSETKCHVFSYVSEDKVIHKDTITSWLSEVGAPEEAFNMVAEDILQCVSEMGNGICKNSRGLSIRVDLSVSRGCKEEEEDEETNCLDVNEEEVEVKVEEDEDNALVHPVTRTIEDSHDNDEWKYRWDEEEMEIEEQEDNELTPTDTRSAEDDHGENDYGDERNSYWEEDMEIEEDNTSVIELEIDRDNRSVIELEIDRDNRSVIELEIGRDNRSVIELEIGRDNRSVIELEIGRDNRSVIELEIGRDNRSVIELEIGRDNRSVIELESNGDNRSVIELESNGDNRSVIEVESDGDNRSVIELESDGDNRSVIEVESDEDEWNYGWEEMIGIEEDIRFIPAAKSGIEGLKMVTVEEAGKCPICFEDFNVGVCMPCSHTFHMNCIQDWLNVGNSCPLCRFQLPTSSTDE 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00457 455 SMART ring_2 407 444 IPR001841 -
Vifa2g00457 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 454 IPR013083 -
Vifa2g00457 455 MobiDBLite consensus disorder prediction 188 210 - -
Vifa2g00457 455 SUPERFAMILY RING/U-box 406 450 - -
Vifa2g00457 455 ProSiteProfiles Zinc finger RING-type profile. 407 445 IPR001841 -
Vifa2g00457 455 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 238 449 - -
Vifa2g00457 455 MobiDBLite consensus disorder prediction 179 210 - -
Vifa2g00457 455 Pfam Ring finger domain 406 445 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00457 Vifa-Chr2 78179110 78180477 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00457 387 449 C3H Transcription Factor Family AT1G14200 36.620 1.07e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00457 - - tpra:123917079 189.889