Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00442 ATGGCATCCTTAATTCTCTTTTTAACTCTCGTTATTCATCTTGAAATTGTGTTGGTGGTTGATGTCATCAAAGGAGAACCTCTAGTTCCAGCATTATTTGCATTTGGAGACTCAATTGTTGATGTTGGAAATAACAACTATTTAGCAACCGTGGCTAAAGCAAATTTCTTTCCTTATGGAAGAGACTTTGTAAGTCACTCTCCAACTGGAAGATTTTCTAATGGAAAGGTTGTCTCAGATTATACATCTGAATTATTTGGATTTCCCTCATACCAACCGGCTTACCTTAGTCTAACTACTAAAGGAAACAATCTTTTGAACGGTGTCAACTTTGGCTCGGCTGGATCTGGTTACTATGAGTTCACAGCAAAGAAATATCAAGTACTTACATTAAGCCAACAACTAAACTACTACAAGGATTACCAAAAAGAATTGGTGAAAATAGCTGGACAATCAACTGCACTATCAATTATATATGGTTCAATATATTTTGTTATTAGTGGGTCTGCTGATTTTGCCCTAAATTATTACACAAGTCCAGTTCTCCAAACAATTTACACACCTTATCAATTTTCAGACATTCTTTTGCAAAACTACTTTAATTTCATCCAGGATTTATATGCACTAGGAGCAAGGAAGATTGCTGTGTCAACATTGCCTCCTATAGAGAAATTACTACAAAAATTTCCAAAGCTTAGACTCATCATCCTTGATACCTACCAATCTCTCTATAAACTTATCACCAAACCTTCTGATTATGGATTTTTTGAGTCAAGGAGGGCATGTTGTGGGACAGGATTGCTAGAAGTTGCTATTTTTTGCAATCGAATTTCTGTTGGAACATGTACCAATGCATCGGAATATGTATTTTGGGATAGTTTTCATCCCACTGAAGCTACAAACAAGTATTTGATTGATTATTTGGCTCCTACTTTAATCTCTTTCATACAAACTTAA 957 0.3521 MASLILFLTLVIHLEIVLVVDVIKGEPLVPALFAFGDSIVDVGNNNYLATVAKANFFPYGRDFVSHSPTGRFSNGKVVSDYTSELFGFPSYQPAYLSLTTKGNNLLNGVNFGSAGSGYYEFTAKKYQVLTLSQQLNYYKDYQKELVKIAGQSTALSIIYGSIYFVISGSADFALNYYTSPVLQTIYTPYQFSDILLQNYFNFIQDLYALGARKIAVSTLPPIEKLLQKFPKLRLIILDTYQSLYKLITKPSDYGFFESRRACCGTGLLEVAIFCNRISVGTCTNASEYVFWDSFHPTEATNKYLIDYLAPTLISFIQT 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00442 318 Pfam GDSL-like Lipase/Acylhydrolase 32 307 IPR001087 GO:0016788
Vifa2g00442 318 PANTHER GDSL ESTERASE/LIPASE EXL3 11 224 - -
Vifa2g00442 318 SUPERFAMILY SGNH hydrolase 32 312 - -
Vifa2g00442 318 CDD SGNH_plant_lipase_like 30 308 IPR035669 -
Vifa2g00442 318 Gene3D SGNH hydrolase 21 314 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00442 Vifa-Chr2 75197048 75198719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00442 27 306 Acyl Lipid Metabolism Gene Families AT4G10950 31.661 1.13e-55 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00442 - - mtr:25492343 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00442 2 75197048 75198719 Vifa2g00442 2 75197048 75198719 ECH
Vifa1g07863 1 1227338543 1227340637 Vifa2g00442 2 75197048 75198719 PCT