Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00429 ATGGCTGCAGCTGCAACTATGATAGGAGGTGCTTTTCTCTCTGCAACTGTTCAAACCTTAGTTGAGAAACTTGCTTCAACCGAGTTTCTTGATTACATCAGAAACACCAAGCTCAATGTGACACTCTTGAGAAAGTTCCAAACAACCCTGCTCACTCTTCAGGCTGTGCTGGATGATGCAGAAGAGAAGCAGATCAGCACTCCTGCTGTCAAAAATTGGCTAGATGACCTGAAAGATGTTGTCTTAGATGCTGAGGATTTGATCAATCAAATAAGTTATGATTCCCTTCGGTGCAAGATGGAGAATAGACAAGTTGGAAGCAAAACTAATCAGGTTTGGAACATTCTTTCCTCTCCTTTTAAAAACTTCAATAGAGATATCAATTCCCAATTGAAGATCATGTGTGAAACCCTTGAACCTTTTGCACAACATAAAGATACCCTTGGATTGCAAACAAAAAGTGCTAGAGTTTCTCGAAGACCACCTTCAAGTTCAGGGGTTAATGAATCTGTCATGGTTGGTAGGAATGATGATAAAAATACAATCATCAATATGCTTGTATCAGACTGCGGCACTAGCAAAAATATTAATTTAGGTGTTGTTGCAATTTTGGGCATGGGAGGTATCGGAAAAACCACCCTTGCACAACTTGTTTACAATGATGAAAAAGTTGAAGAACATTTTGATTTCAAAGTCTGGGTTTGTGTATCAGAGGACTTCGATGTTGTGAGAGTAACCAAGTCTCTCCTTGAATCTGTTGTTAGAAATACAACATCTGCTGCTTCAAAGGTATGGGAAAGCGATAATCTTGATATTCTTCGAGTTGAATTAAAGAAAAATTCGAGGGAGAAAAGATTTTTGTTTGTGTTGGACGACTTGTGGAATGACAACTACAATGATTGGGATGAGCTAGTAAGTCCCCTCATTGATGGAAAACCCGGAAGTTCAGTGATTATAACAACTCGCCAACAAAAAGTTGCAGAGATGGCGAAGACATTTCCTATTTATAAATTAGACCCTCTATCAGATGAAGATTGTTGGTCTATACTCTCAAAACATGCATTGGGAAGTGATGAATGTGATGCCAGTAAAAACACAGCCCTTGAAGAGATAGGTAGGAAGATTGCAAGAAAGTGTGGAGGATTGCCAATAGCTGCTAAAACACTAGGAGGACTTCTACGTTCAAGGGTAGACACAATGTCGTGGACTGATATTTTGAACAGCAATGTATGGAACTTGCCAAATGATAATATTATGCCGGCTTTACATTTGAGTTACCAATATCTTCCATCTCATTTGAAAAGATGTTTTGCATATTGTTCAATTTTTCCAAAGGACTATCCACTTGATAGGAAGACATTGATTTTGTTGTGGATGGCAGAGGGCTTCCTTGACTATTCTCACGGGGGAAAATTGGTAGAGGAAGTAGGTGATGATTGCTTTGCTGAATTGTTGTCTAGATCCTTAATTCAACAATCAAATGATGGTGCTCGTGGCAAATTGTTTTACATGCATGACCTTATCAACGATTTAGCTACATCAGTATCTGGAAAAATTTGTTGTCGGTCTGAATTTGGTGACATCCCTGAAAACGTTCGTCATTTATCATATATTCAAGAAGACTATGATATTTTCGTGAAGTTTAGGCCTTTCTACAATTATAAATGCTTGCGAAGCTTCCTGCCCATTACTTCTAGGGGGTGGTCACACAAGTACTTATCCATCAAGGTGGTTGATGATCTGCTACCACTATTCAAAAGGTTACGCGTGTTATCGCTATCCAAGTATACAAACATCACTAAGTTACCAGATTCAATTGGCAATTTAGTGCAGCTGCGGTATCTAGATCTTTCACACACTAGAATCGAATGTTTGCCTGATACAGTATGTAACCTTTACAATTTGCAAACTTTGAATTTATTATGTTGCTACAATCTCACTGAATTGCCAGTGCATATGGGAAATTTAATCAGTTTACGTCACCTTGATATAAGTGGGACTAACATAAAAGAGTTGCCTATGGAAATTGGTGGACTAGAAAACCTCCAAACTTTGACTGTTTTTTTAGTGGGAAAGCGACATGAAGGGTTAAGTATCAAAGAGCTAGAGAAATTTCCAAACCTACAAGGAAAGTTTACCGTAAATAACCTACACAATGTTGTTGATGCAAAAGAGGCAGAAGAAGCCAACCTGAAAAACAAAGAGAAAATTGAGGAGTTAGAGTTGATATGGGGAAAACAAAGTGAAGATTCAATAAAAGTGAAAGTTGTGCTTGAAATGTTGCAACCACCAATAAACTTGAAGAGCCTAAAGATTAACTTGTATGGTGGGACAAGTTTTCCGAATTGGTTGGGAAATTCTTCGTTCTCTAACATGGTGTCCCTTGACATTGATAGGTGTGAATACTGCATGACACTTCCACCGCTAGGCCAACTACCTTCTCTCAAGAAGCTGAGTATATCGAATTTATTGTTATTGGAGACAATTGGCCCAGAGTTCTATTGTGTTGAGGAAGGAGAATGTTCCAATTCTACCTTCCAGCCATTTCCTTCCCTTGAGCATATGAGATTTTACAACATGCCAAATTGGAAGGATTGGATTTCCTTTGAAGGCATAAATTTAGCATTTCCAAAACTTAGAACTATGCAGTTACATAATTGTCCTGAACTAAGGGGAGATTTGCCTAGCCACCTTTCATGCATGGAAGAAATTGAAACAGGAGGTTGTTATAAGATATTGGAAACACCCCGTACTTTGAATTGGCTATCGACAATCAAAAGTGTAAGAATTACAGAAGATACTGATGCTCAACATGCAGCTGCAGAAAGTTACCCAATGTTTATATCTAAAACGTTCATGAGTAGTATTTGTCTTACTCATTTGGTACTCGCAAATATTGAATCTCTCACTGCATTTCCCACAAATGGTCTACCCACTTCATTGCAGTCACTTTATATTGATGGGTGTAGGAAGTTATCCTTCATGGGTGTAGAAACATTTCAAAATTACACGTCACTCGTGACTCTTGCTATATGGAATAGCTGTGATTCACTTACATCATTTCCACTTGATGGTTTCCCCGCGCTCCAAACACTTTCCATTGATGATTGCAGGAGTATGAATTCCATTTATATTTCCGAAAGTCCTTCACGGCGGCAGTCAACCCTCCGATCACTTACAATCAGATCTGATGACTCAGATGAAACACTTAAAGTCAATCTTGGGTTGGACACGCTCACCAATCTTGAACATTTGTATTTTCGGTGTTCTGGAGAGTTGTCATTTTGTGAAGGAGTTTGTCTACCCTCCAAATTACAATCAATTGAGATTTTTTTTAAAGGAACAAATCTGCATGTAAAGGAATGGGGTCTCCAAGACCTAACCGCTCTTTCAAGATTGACAATTCAAGAATGTGGTGAAATGGAAAACACCTTGACGATGGAATCGTTGCTCCCCATCTCCCTTGTGTTTCTCAGTGTCAGTAATATGTCCTTTGGGCTTCGACACCTCTCGTCTCTCCAACATCTCGGATTCAACCATCTCAAGTCATTGCCAGAAAATTGCCTCCCTTCCTCGCTGAAATCACTTGAATTTAGTAACTGTCAACATCTCAAGTCATTGCCAGAAAATTGCCTCCCTTCCTCGCTGAATTCACTTGAATTTAGTGACTGTCAACATCTCAAGTCATTGCCAGAAAAATGCCTTCCTTCCTCGCTGAATTCACTTAAACTTGGGTATTGTAAACACTTAGAGTCATTACCGGAAGACAGCCTACCTGCCTCTCTTAAGAAACTGACCATCACAGAATGCCCATTGTTAGAAGAAAGGTATAAAAGGAAGGAAAATTGGTCCAAAATTTCTCACATTCCTGTCATACAAATAAATTACCAAGTCACAATATGA 3903 0.3892 MAAAATMIGGAFLSATVQTLVEKLASTEFLDYIRNTKLNVTLLRKFQTTLLTLQAVLDDAEEKQISTPAVKNWLDDLKDVVLDAEDLINQISYDSLRCKMENRQVGSKTNQVWNILSSPFKNFNRDINSQLKIMCETLEPFAQHKDTLGLQTKSARVSRRPPSSSGVNESVMVGRNDDKNTIINMLVSDCGTSKNINLGVVAILGMGGIGKTTLAQLVYNDEKVEEHFDFKVWVCVSEDFDVVRVTKSLLESVVRNTTSAASKVWESDNLDILRVELKKNSREKRFLFVLDDLWNDNYNDWDELVSPLIDGKPGSSVIITTRQQKVAEMAKTFPIYKLDPLSDEDCWSILSKHALGSDECDASKNTALEEIGRKIARKCGGLPIAAKTLGGLLRSRVDTMSWTDILNSNVWNLPNDNIMPALHLSYQYLPSHLKRCFAYCSIFPKDYPLDRKTLILLWMAEGFLDYSHGGKLVEEVGDDCFAELLSRSLIQQSNDGARGKLFYMHDLINDLATSVSGKICCRSEFGDIPENVRHLSYIQEDYDIFVKFRPFYNYKCLRSFLPITSRGWSHKYLSIKVVDDLLPLFKRLRVLSLSKYTNITKLPDSIGNLVQLRYLDLSHTRIECLPDTVCNLYNLQTLNLLCCYNLTELPVHMGNLISLRHLDISGTNIKELPMEIGGLENLQTLTVFLVGKRHEGLSIKELEKFPNLQGKFTVNNLHNVVDAKEAEEANLKNKEKIEELELIWGKQSEDSIKVKVVLEMLQPPINLKSLKINLYGGTSFPNWLGNSSFSNMVSLDIDRCEYCMTLPPLGQLPSLKKLSISNLLLLETIGPEFYCVEEGECSNSTFQPFPSLEHMRFYNMPNWKDWISFEGINLAFPKLRTMQLHNCPELRGDLPSHLSCMEEIETGGCYKILETPRTLNWLSTIKSVRITEDTDAQHAAAESYPMFISKTFMSSICLTHLVLANIESLTAFPTNGLPTSLQSLYIDGCRKLSFMGVETFQNYTSLVTLAIWNSCDSLTSFPLDGFPALQTLSIDDCRSMNSIYISESPSRRQSTLRSLTIRSDDSDETLKVNLGLDTLTNLEHLYFRCSGELSFCEGVCLPSKLQSIEIFFKGTNLHVKEWGLQDLTALSRLTIQECGEMENTLTMESLLPISLVFLSVSNMSFGLRHLSSLQHLGFNHLKSLPENCLPSSLKSLEFSNCQHLKSLPENCLPSSLNSLEFSDCQHLKSLPEKCLPSSLNSLKLGYCKHLESLPEDSLPASLKKLTITECPLLEERYKRKENWSKISHIPVIQINYQVTI 1300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00429 1300 SUPERFAMILY L domain-like 1072 1274 - -
Vifa2g00429 1300 SUPERFAMILY RNI-like 950 1142 - -
Vifa2g00429 1300 Gene3D - 16 133 - -
Vifa2g00429 1300 Gene3D Ribonuclease Inhibitor 1150 1286 IPR032675 -
Vifa2g00429 1300 Gene3D Ribonuclease Inhibitor 943 1149 IPR032675 -
Vifa2g00429 1300 Gene3D Ribonuclease Inhibitor 564 937 IPR032675 -
Vifa2g00429 1300 Pfam NB-ARC domain 177 407 IPR002182 GO:0043531
Vifa2g00429 1300 PANTHER DISEASE RESISTANCE PROTEIN RP 45 1031 IPR044974 GO:0006952
Vifa2g00429 1300 Pfam Rx N-terminal domain 12 105 IPR041118 -
Vifa2g00429 1300 Gene3D - 162 333 IPR027417 -
Vifa2g00429 1300 PRINTS Disease resistance protein signature 607 623 - -
Vifa2g00429 1300 PRINTS Disease resistance protein signature 379 393 - -
Vifa2g00429 1300 PRINTS Disease resistance protein signature 200 215 - -
Vifa2g00429 1300 PRINTS Disease resistance protein signature 280 294 - -
Vifa2g00429 1300 FunFam Probable disease resistance protein At1g63360 426 514 - -
Vifa2g00429 1300 SUPERFAMILY L domain-like 504 927 - -
Vifa2g00429 1300 Gene3D - 340 424 IPR042197 -
Vifa2g00429 1300 FunFam Probable disease resistance protein At1g61300 155 332 - -
Vifa2g00429 1300 Coils Coil 43 63 - -
Vifa2g00429 1300 Coils Coil 714 743 - -
Vifa2g00429 1300 SMART LRR_typ_2 609 632 IPR003591 -
Vifa2g00429 1300 SMART LRR_typ_2 1167 1191 IPR003591 -
Vifa2g00429 1300 SMART LRR_typ_2 656 679 IPR003591 -
Vifa2g00429 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 440 IPR027417 -
Vifa2g00429 1300 Gene3D - 425 514 IPR036388 -
Vifa2g00429 1300 Pfam FNIP Repeat 1179 1223 IPR008615 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00429 Vifa-Chr2 72169931 72173833 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00429 196 879 WRKY Transcription Factor Family AT5G45050 22.624 9.24e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00429 - - tpra:123915821 1744.17