Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00416 ATGGCTGCAGCTGCAACTATGATAGGAGGTGCTTTTCTCTCTGCAACTGTTCAAACCTTAGTTGAGAAACTTGCCTCAACAGAGTTTCTTGAATACATCCGAAACACCAAGCTGGATGTCTTCCTCTTGAGAAAGTTACAAACAACCTTGCTCACTCTTCAGGCTGTGCTGGATGATGCAGAAGAAAGGCAGATCAACAATCTTGCTGTCAAAAAATGGCTAGATGACTTGAAAGATGTTGTCTTAGATGCTGAGGATTTGGTCAATCAAATAAGTTATGATTCCCTTCGATGCAATATGGAGAATACACAAGCTGGAAGCAAAACTAATCAGGTTTGGAACTTTGTTTCCTCTCCTTTTAAAAACTTCAATAGAGATATCAATTCCCAATTGAAGATCATGTGTGAAACCCTTGAACCTTTTGCACAACACAAAGATACCCTTGGATTGCAAACAAAAAGTGCTAGAGTTTCTCGAAGACCGCCTTCAAGTTCAGGGGTTAATGAATCTGTCATGGTTGGTAGGAGTGATGATAAAAATACAATCATCAATATGCTTGTATCAGACTGCGGCACTAGCAAAAATATTAATTTAGGTGTTGTTGCAATTTTGGGCATGGGAGGTGTCGGAAAAACGACCCTTGCACAACTTGTTTACAATGATGAAAAAGTTGAAGAATATTTTGATTTCAAAGTCTGGGTTTGTGTATCAGAGGACTTCGATGTTGTGAGAGTAACCAAGTCTCTCCTTGAATCAGTTGTTAGAAATACACCATCTGCTACTTCAAAGGTTTGGGAAAGCGATAATCTTGATATTCTGCGAGTTGAATTAAAGAAAAATTCAAGGGAGAAAAGATTTTTATTTGTGTTGGATGACCTGTGGAATGACAACTACAATGATTGGGATGAGCTAGTGAGTCCCCTCATTGATGGAAAACCTGGAAGTTCAGTGATTATAACAACACGCCAAGAAAAAGTTGCAGAGATGGCAAAGACATTTCCAATTTATAAATTATACCCTCTGTCACATGAAGATTGTTGGTCTATACTCTCAAAACATGCATTGGAAAATGATGAATATCACGACAGTAAAAACATAGCCCTTGAAGAGATTGGTAGGAAGATTGCAAGAAAGTGTGGTGGATTGCCAATAGCTGCTAAAACACTGGGAGGACTTCTACGTTCAAGAGTAGACACAACCGAATGGACTGCAATTTTGAATAGCGATGTATGGAACTTACCGAATGATAACATTATGCCGGCTTTGCATTTAAGTTACCAATATCTTCCGTCTCATTTGAAAAGATGTTTTGCATATTGTTCAATTTTTCCAAAGGATTATCCACTTGATAGGAAAACATTGATTTTGTTGTGGATGGCAGAGGGCTTCCTAGATTGTTCTCACGGGGGAAAATTGGTAGAGGAAGTAGGTGATGATTGCTTTGCTGAATTGTTGTCTAGATCCTTAATTCAACAATCAAATGATGGTGCTCGTGGCAAATTGTTTTACATGCATGACCTTATCAACGATTTAGCTACATCAGTATCTGGAAAAATTTGTTGTAGGTCTGAATTTGGTGACTTCCCTGAAAACGTTCGTCATTTATCATATATTCAAGAAGAGTATGATATTTTCGTGAAGTTTAGGCCTTTCTACAATTATAAATGCTTGCGAAGCTTCCTGCCCATTACTTCTAGGGGGTGGTCACACAAGTACTTATCCATCAAGGTGGTTGATGATCTGCTACCACTATTCAAAAGGTTACGCGTGTTATCGCTATCAAAGTATACAAACATCACTAAGTTACCAGATTCAATTGGCAATTTAGTGCAGTTGCGGTATCTAGATCTTTCATACACTAAAATCAAATGTATGCCTGATACAGTATGTAACCTTTACAATTTGCAAACTTTGAATTTATTATGTTGCTACAATCTCACTGAATTGCCAGTGCATATGGGAAATTTAATCAGTTTACGTCACCTTGATATAAGTGGGACTTACTTAAAAGAGTTGCCTATGGAAATTGGTGGACTAGAAAACCTCCAAACTTTGACTGTTTTTTTAGTGGGAAAGCCACGTGAAGGGTTAAGTATCAAAGAGCTAGAGAAATTTCCAAACCTACAAGGAAAGTTTACCATAAAAAACCTACACAATGTTGTTGATGCAAAAGAGGCAGAAGAAGCCAACCTGAAAAACAAAGAGAAAATTGAGAAGTTAGAGTTGACATGGGGAAAAGAAAGTGAAGATTCACTACAAGTGAAAGTTGTGCTTGAAATGTTGCAACCACCAATAAGCTTGAAGAGGCTAAAAATTAACTTGTACGGTGGGACAAGTTTTCCGAATTGGTTGGGAAATTCTTCGTTTTCTAACATGGTGTCCCTTGAAGTTTGTAATTGTAAATATTGCATGACACTTCCACCGCTAGGTCAACTACCTTCTCTCAAGAAGCTGAGTATATCGAATTTGTCGTTATTGGAGACAATTGGCCCAGAGTTCTATTGTGTTGAGGAAGGAGAATGTTCCAATTCTACCTTCCAACCATTTCCTTCCCTTGAGCATATGAAATTTTACAACATGCCAAATTGGAAGGATTGGATTTCCTTTGAAAGCATAAATTTTGCATTTCCAAAACTTAGAACTATGGTGTTACATAATTGTCCTGAACTAAGGGGAGATTTGCCTAGCCACCTTTCATGCATGGAAGAAATTGAAACAGGAGGTTGTTATAAGATACTGGAAACACCCCGTACTTTGAATTGGCTATCGACAATCAAAAGAGTAATAATTAGAGAAGATACTGATGCTCAACATGCAGCTGCAGAAAGTTACCCAATGTTTATACCTAAAACGTTCATGAGTAGTATTTGTCTTACTCATTTGGAACTCAGAAATATTGAATCTCTCACTGCATTTCCCACAAATGGTCTACCCACTTCATTGCAGTCGCTTCGTATTCACATGTGTGAGAAGTTATCCTTCATGCCTTTCGAAACATTTCAAAATTACACGTCACTCGTGAGTCTTGCTATCTGGCATAGCTGTGACTCACTTACATCATTTCCACTTGATGGTTTCCCCGCGCTCCAAACACTTTCCATTAAAGATTGCAGGAGTATGAATTCCATTTATATTTCCGAAAGTCCTTCACGTCGGCCGTCAGCCCTCCAATCACTTGCCATCAGATCAATTGAAACACTTAAAGTCAATCTTCGGTTGGACACGCTCACCAATCTTGAACATTTGTATTTTCGGTGTTCTGGAAAGTTGTCATTTTGTGAAGGAGTTTGTCTACCCTCCAAATTACAATCAATTGAGATTTCTTTTAAAGGAACAAATCTGCATGTAAAGGAATGGGGTCTCCAAGACCTAACCGCTCTTTCAAGATTGACAATTCAAGAAAAGGGTGAAATGGAAAACACCTTGACGATGGAATCGTTGCTCCCCATCTCCCTTGTGTCTCTCACTGTCAGTAATATGTCCTTTGGGCTTCGACACCTCTCGTCTCTCCAACATCTCCGATTCAACCATCTCAAGTCATTGCCAGAAAATTGCCTCCCTTCCTCGCTGAAATCACTTGGATTTAGTGACTGTCAACATCTCAAGTCATTGCCAGAAAAATGCCTTCCTTCCTCGCTGAATTCACTTAAACTTGGGTATTGTGAACACTTAGAGTCATTACCGGAAGACAGCTTACCTGCCTCTCTTAAGAAACTGACCATCACAGGTTGCCCATTGTTAGAAGAAAAGTATAAAAGGAAGGAAAATTGGTCCAAAATTGCTCACATTCCTTTCATAAAAATAAATGACCAAGTCACAATATGA 3825 0.3864 MAAAATMIGGAFLSATVQTLVEKLASTEFLEYIRNTKLDVFLLRKLQTTLLTLQAVLDDAEERQINNLAVKKWLDDLKDVVLDAEDLVNQISYDSLRCNMENTQAGSKTNQVWNFVSSPFKNFNRDINSQLKIMCETLEPFAQHKDTLGLQTKSARVSRRPPSSSGVNESVMVGRSDDKNTIINMLVSDCGTSKNINLGVVAILGMGGVGKTTLAQLVYNDEKVEEYFDFKVWVCVSEDFDVVRVTKSLLESVVRNTPSATSKVWESDNLDILRVELKKNSREKRFLFVLDDLWNDNYNDWDELVSPLIDGKPGSSVIITTRQEKVAEMAKTFPIYKLYPLSHEDCWSILSKHALENDEYHDSKNIALEEIGRKIARKCGGLPIAAKTLGGLLRSRVDTTEWTAILNSDVWNLPNDNIMPALHLSYQYLPSHLKRCFAYCSIFPKDYPLDRKTLILLWMAEGFLDCSHGGKLVEEVGDDCFAELLSRSLIQQSNDGARGKLFYMHDLINDLATSVSGKICCRSEFGDFPENVRHLSYIQEEYDIFVKFRPFYNYKCLRSFLPITSRGWSHKYLSIKVVDDLLPLFKRLRVLSLSKYTNITKLPDSIGNLVQLRYLDLSYTKIKCMPDTVCNLYNLQTLNLLCCYNLTELPVHMGNLISLRHLDISGTYLKELPMEIGGLENLQTLTVFLVGKPREGLSIKELEKFPNLQGKFTIKNLHNVVDAKEAEEANLKNKEKIEKLELTWGKESEDSLQVKVVLEMLQPPISLKRLKINLYGGTSFPNWLGNSSFSNMVSLEVCNCKYCMTLPPLGQLPSLKKLSISNLSLLETIGPEFYCVEEGECSNSTFQPFPSLEHMKFYNMPNWKDWISFESINFAFPKLRTMVLHNCPELRGDLPSHLSCMEEIETGGCYKILETPRTLNWLSTIKRVIIREDTDAQHAAAESYPMFIPKTFMSSICLTHLELRNIESLTAFPTNGLPTSLQSLRIHMCEKLSFMPFETFQNYTSLVSLAIWHSCDSLTSFPLDGFPALQTLSIKDCRSMNSIYISESPSRRPSALQSLAIRSIETLKVNLRLDTLTNLEHLYFRCSGKLSFCEGVCLPSKLQSIEISFKGTNLHVKEWGLQDLTALSRLTIQEKGEMENTLTMESLLPISLVSLTVSNMSFGLRHLSSLQHLRFNHLKSLPENCLPSSLKSLGFSDCQHLKSLPEKCLPSSLNSLKLGYCEHLESLPEDSLPASLKKLTITGCPLLEEKYKRKENWSKIAHIPFIKINDQVTI 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00416 1274 Gene3D - 16 133 - -
Vifa2g00416 1274 SMART LRR_typ_2 1164 1188 IPR003591 -
Vifa2g00416 1274 SMART LRR_typ_2 656 679 IPR003591 -
Vifa2g00416 1274 SMART LRR_typ_2 609 632 IPR003591 -
Vifa2g00416 1274 Gene3D Ribonuclease Inhibitor 942 1147 IPR032675 -
Vifa2g00416 1274 FunFam Probable disease resistance protein At1g63360 426 514 - -
Vifa2g00416 1274 Gene3D Ribonuclease Inhibitor 563 937 IPR032675 -
Vifa2g00416 1274 Gene3D - 162 333 IPR027417 -
Vifa2g00416 1274 PANTHER DISEASE RESISTANCE PROTEIN RP 43 1037 IPR044974 GO:0006952
Vifa2g00416 1274 SUPERFAMILY L domain-like 949 1251 - -
Vifa2g00416 1274 FunFam Probable disease resistance protein At1g61300 155 332 - -
Vifa2g00416 1274 SUPERFAMILY L domain-like 504 928 - -
Vifa2g00416 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 440 IPR027417 -
Vifa2g00416 1274 Gene3D - 340 424 IPR042197 -
Vifa2g00416 1274 Pfam NB-ARC domain 178 407 IPR002182 GO:0043531
Vifa2g00416 1274 MobiDBLite consensus disorder prediction 152 171 - -
Vifa2g00416 1274 Gene3D - 425 514 IPR036388 -
Vifa2g00416 1274 Coils Coil 714 743 - -
Vifa2g00416 1274 Coils Coil 43 63 - -
Vifa2g00416 1274 Gene3D Ribonuclease Inhibitor 1163 1260 IPR032675 -
Vifa2g00416 1274 PRINTS Disease resistance protein signature 379 393 - -
Vifa2g00416 1274 PRINTS Disease resistance protein signature 810 826 - -
Vifa2g00416 1274 PRINTS Disease resistance protein signature 200 215 - -
Vifa2g00416 1274 PRINTS Disease resistance protein signature 280 294 - -
Vifa2g00416 1274 Pfam Rx N-terminal domain 12 104 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00416 Vifa-Chr2 68566414 68570238 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00416 196 890 WRKY Transcription Factor Family AT5G45050 22.955 3.37e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00416 - - tpra:123915821 1669.83