Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00414 ATGGCTCTCGGCGTCTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCACAGTGTGCTTTGTTGAACTCTGAATCATTATGCGTAAGCACTTGTCTACTTTATTCAGATATATTTCTCTTTGGTGCAAGGACAGTGTACAGGGAAATCTGCCTTGGAGATGGTGGATATGTTGTATGTTATGAGATGGCAGAGATTGAAAATAAACTTGGATTGGGACGGGATTCATTGATTGCTCTCTCTTTGCTTCTCGGCAGTGACTATCATCCAGGAGTTCATGGTTTAGGTCCGGAGTTAGCTTGTCAGATAGTAAAATCAATTGGGGAGAAAGATGTTCTAAAAAAATTTGCTTCTGAAAGACTTGGATGGGTGAAAAAAAGAAAAGGAGCTAAAAATAATATAGGAAAGGACGATACCATTTTACAAGTGATTGATGCTTATTTGAAGCCAAAATGCCACTCAGCTGATTCAGACTTTGTGCTCAAGGCTCATTCTCAGTATCCATTTCAACGTACTAAGCTCCATCATATATGCGCTGTATACTTCGAATGGCCTTCGGAGAGAACAGATGGATATATCCTTCCATGTATAGTCGAAAGGGATTTACGACGATTTGCCAATTTGCGATCAACTTCGTCTGAACTTGGGTTGAACCTTCCTTTACATGAGGGATTGGAATCACCCGCTGATGGTAGACGTTCATCTGAGTCTAGCTATCGTATTGGAGATAATGGAACTTCAGGGGGGACAAATTAG 753 0.409 MALGVSCLNGIEEAEAQCALLNSESLCVSTCLLYSDIFLFGARTVYREICLGDGGYVVCYEMAEIENKLGLGRDSLIALSLLLGSDYHPGVHGLGPELACQIVKSIGEKDVLKKFASERLGWVKKRKGAKNNIGKDDTILQVIDAYLKPKCHSADSDFVLKAHSQYPFQRTKLHHICAVYFEWPSERTDGYILPCIVERDLRRFANLRSTSSELGLNLPLHEGLESPADGRRSSESSYRIGDNGTSGGTN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00414 250 SUPERFAMILY PIN domain-like 2 86 IPR029060 -
Vifa2g00414 250 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 2 213 IPR006084 -
Vifa2g00414 250 MobiDBLite consensus disorder prediction 230 250 - -
Vifa2g00414 250 Gene3D - 1 70 - -
Vifa2g00414 250 Gene3D - 71 134 - -
Vifa2g00414 250 Pfam XPG I-region 4 86 IPR006086 GO:0004518
Vifa2g00414 250 FunFam Flap endonuclease GEN-like 1 71 128 - -
Vifa2g00414 250 SMART xpgineu 1 71 IPR006086 GO:0004518
Vifa2g00414 250 MobiDBLite consensus disorder prediction 225 250 - -
Vifa2g00414 250 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 71 208 IPR036279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00414 Vifa-Chr2 68267879 68269948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00414 3 119 Core DNA Replication Machinery Family AT5G26680 29.167 1.39e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00414 K15338 - gmx:100806919 359.377