Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00407 ATGCTAGAACGAGACCAAAACACCATTAGAGTGGTTCATCAAGATAGTGATTCTATTTCGGTTGTGCCTGATCATTGGTCTTCATTTTCAGGTTTTACCGCGTCGAATGGGGTTTCTCGAGGTGATTATGCTAGTGAGATGAATGAGTTAGGGTTTGCTGGTCAAAATGTTGCTAATCAGTTTACAGATTTTAGGAATGGTAACGGGAATTTGATTGAATTTTTAAGGGTTTCGAATGATGATGCATCAGTCCTATTGGATGACACTTCGAGCTTCACTGGAGAGAAGTCGGCGGGCGCAAATGTGAATTCACTGAGAGATATTATTGCTGCTTCTGCTCGAGATTCTGTTGTAGCTTGGGGTGGTCCAACATGGAGTGTTGGGTTTGGAAGAAGAGGTTCAACAACTGCTAGTAAAGATAATGCCACTAGTGATATTCCATCCCCTCTAATGGATCTTAGTGACCTCTTAACTACTTTTTCAAATGAGGACCTGAAGGCAGCTTTAGAGGAAGCTCGAGCGATTGTAGAGGAGCTCAAAGATTTTTTTTTACTATGTATTAGCCCCCTACTTTCCTCCAAGATATATTGTGCTCCAACTAATGATAAAACACATCTCCCAAAGGAAACTAATGACGGGAAGCTATATACCCCAATTGCTATTGATCTATTCAGGATAATTGAAGACCAAATTCAAATTGTTCGAGATTATAGTGCTGATGTTATGTTTTACAAAATTTCCTTAGCTAGTATTGAGGTGATGATTGGTTTTCAAGTAGCCGAAAAGAAGAGACGTAAACGACCTGCTTCTGAAATTGGTGTGAAACCTTTATGTGCTATGGTCAATAACAATTTGTGCTGCCATGATTTTGCGTTGGAGCTAAGTCATAGGATCTTAGAAGTCCTTCCACAGAACTATGTAGAGCAGATTAATTTATGCATAAATGAGTCAGTAGACAAGATTAATGTTAATTTTGGAATAAACTCATAG 990 0.3899 MLERDQNTIRVVHQDSDSISVVPDHWSSFSGFTASNGVSRGDYASEMNELGFAGQNVANQFTDFRNGNGNLIEFLRVSNDDASVLLDDTSSFTGEKSAGANVNSLRDIIAASARDSVVAWGGPTWSVGFGRRGSTTASKDNATSDIPSPLMDLSDLLTTFSNEDLKAALEEARAIVEELKDFFLLCISPLLSSKIYCAPTNDKTHLPKETNDGKLYTPIAIDLFRIIEDQIQIVRDYSADVMFYKISLASIEVMIGFQVAEKKRRKRPASEIGVKPLCAMVNNNLCCHDFALELSHRILEVLPQNYVEQINLCINESVDKINVNFGINS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00407 329 PANTHER EXOCYST COMPLEX COMPONENT SEC6-RELATED 204 296 IPR010326 GO:0000145|GO:0006887
Vifa2g00407 329 Gene3D - 102 146 - -
Vifa2g00407 329 SUPERFAMILY Heme-dependent peroxidases 80 166 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vifa2g00407 329 Coils Coil 162 182 - -
Vifa2g00407 329 Gene3D - 199 324 - -
Vifa2g00407 329 Pfam Exocyst complex component Sec6 206 319 IPR010326 GO:0000145|GO:0006887
Vifa2g00407 329 ProSiteProfiles Plant heme peroxidase family profile. 95 245 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa2g00407 329 Pfam Peroxidase 101 166 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa2g00407 329 Gene3D Peroxidase, domain 2 147 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00407 Vifa-Chr2 65419317 65420505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00407 77 161 Peroxidase AT5G05340 46.296 1.33e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00407 K06110 - gmx:102660044 161.77