Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00394 ATGAGACTGTGTAACCTTAAGAAAGATGCAAAGACGAACATCCATGCTATTATTGACAAGTTAGCAGAGAGAGGTCTTCGTTCTCTTGCTGTTTCTAGACAATTGGGAGGGTCAAACTTTTGCATTCTTCGGGATGACAAGCAGTTCTTTGTTGACCATCCTGGTGCTGTGCCCATTACCACTGCTCAGGGAGAAGAGCTTAGGAAGCTGATCAATGCACCTGCTTATATTGAATGCAGTTCTAAATCACAGCAGAATGTGAAAGCAGTCTTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCAAAGCAAAAGAAAAAGAAGAGTAAAGCACAAAAGGCCTGTTCGATATTGTGA 357 0.423 MRLCNLKKDAKTNIHAIIDKLAERGLRSLAVSRQLGGSNFCILRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVLQPPKQKKKKSKAQKACSIL 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00394 118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 106 IPR027417 -
Vifa2g00394 118 SMART rho_sub_3 14 101 IPR001806 GO:0003924|GO:0005525
Vifa2g00394 118 Gene3D - 1 45 IPR023299 GO:0000166
Vifa2g00394 118 PANTHER RHO FAMILY GTPASE 43 116 IPR003578 GO:0005525|GO:0007264
Vifa2g00394 118 Pfam Ras family 56 99 IPR001806 GO:0003924|GO:0005525
Vifa2g00394 118 Gene3D - 46 117 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00394 Vifa-Chr2 59886324 59887681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00394 1 34 Primary Pumps ATPases AT2G24520 61.765 1.42e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00394 K04392 - gmx:100801284 131.339