Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00392 ATGGAATCCGAATCCTCTAGCCTCTCAGTCACTTCACAAGATCATGGTGATTCTTCCAAAACAAAAAACGTTTTGAACAAGAAGAAGAATGAACAAGGTCAATCTTCAAAGTCCAATTCCAAGGCGCCTATTGATTTTGTGAAGCTATCGAAAGAGGATTCGGTTGATGAGTCAAAGGTGCAACAGCACAATGGTTTTAGCCCTATTTATGTTGTTGGTTCGTCATCTAATTCACCTAATACCAACAATGAAAAGAAAGACGAGAAAACCAGTGAAGAGAAGAATTTGGAGTCAAAGAAATCTTATTCGTGCAACTTTTGCACGAGAGAATTTTCCTCTTTACAAGCGTTAGGAGGACACCAGAATGCCCATAAAGCAGAACGTGCTTTAAAAAAACAACGTGAACAAAGATACGACACTGATGTTCTAGAGTTAGGACAAACTCACTTGAACCCTTATTTTCGTTATCCTAGTGCTCTTCATTCACCTTATGGAGCACTTGGGGTTCGAATGGACTCAATGATTCAAAAACCATCTATTTTTAACGCTAGGGTTATACCAAATAATTTTGCGTATGGTCATGGTGGTTTGTGTTTGCACGAGACATTACACCCGTCTCTTGTTAGTTTGAGAAATAATATGGAAGGTAGTAGTAGCAGGGTTGGAATTCTAGGTCTTGGTGGTGCAACTTCTTCAAGGGTTGAAAATAGTGCAAATAATAAAATTGGTGATTTTCTAAAATATGGAGATTCTTCTAAAGATGTTGCCATAAGTACAAGCTCTAATTTAGATAAGAATTTTTGTGCGGCTCCTGCTTCTATCAAATATGATACTCATCGACCAAAGTTCAACTTTGAAGAAGAACCTTCTGATTCTGAATCTTCTGGACTTGATCTGACTCTTAGGCTTTGA 912 0.3794 MESESSSLSVTSQDHGDSSKTKNVLNKKKNEQGQSSKSNSKAPIDFVKLSKEDSVDESKVQQHNGFSPIYVVGSSSNSPNTNNEKKDEKTSEEKNLESKKSYSCNFCTREFSSLQALGGHQNAHKAERALKKQREQRYDTDVLELGQTHLNPYFRYPSALHSPYGALGVRMDSMIQKPSIFNARVIPNNFAYGHGGLCLHETLHPSLVSLRNNMEGSSSRVGILGLGGATSSRVENSANNKIGDFLKYGDSSKDVAISTSSNLDKNFCAAPASIKYDTHRPKFNFEEEPSDSESSGLDLTLRL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00392 303 MobiDBLite consensus disorder prediction 1 95 - -
Vifa2g00392 303 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Vifa2g00392 303 SUPERFAMILY beta-beta-alpha zinc fingers 99 130 IPR036236 -
Vifa2g00392 303 Gene3D Classic Zinc Finger 77 148 - -
Vifa2g00392 303 Pfam C2H2-type zinc finger 102 126 - -
Vifa2g00392 303 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 3 303 IPR044246 GO:0009788
Vifa2g00392 303 MobiDBLite consensus disorder prediction 28 43 - -
Vifa2g00392 303 MobiDBLite consensus disorder prediction 60 81 - -
Vifa2g00392 303 MobiDBLite consensus disorder prediction 283 303 - -
Vifa2g00392 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Vifa2g00392 303 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00392 Vifa-Chr2 59097496 59098407 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00392 91 217 C2H2 Transcription Factor Family AT5G01860 35.915 5.89e-14 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g00392 zf-C2H2_6 8.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00392 - - tpra:123915384 310.842