Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00390 ATGGCATCCGAATCCTCAAGCATCTCAAGCACTTCACAAGATCATGGTGATTCTTCCAAAACAAAAAACGTGGTGGACAAGAAGGAGAATGAACAAGGTCAATCTTCAAAATCCGATTCCAACGTGCTTATTGATTTTCTGAAGCTATCGAAAGAGGATTCGGTTGACAGGTCAAAGGTGCAAGAGCACAATGTTTTTAGCCCTATTCAAGTTGGTGGTTCTTCATCCGATTCACCTAATACCAATGAAAAGAAAGATGAGAAAACTACTGAAGAGAAGAATTCGGAGTCAAAGACGACTTATTCATGCAACTTTTGCCCGAGAGAATTTTCCTCTTTACAAACATTAGGAGGACACCAGAACGCCCATAAAACAGAACGTGCTTTAAAAAAACAACCCGAATAA 405 0.3975 MASESSSISSTSQDHGDSSKTKNVVDKKENEQGQSSKSDSNVLIDFLKLSKEDSVDRSKVQEHNVFSPIQVGGSSSDSPNTNEKKDEKTTEEKNSESKTTYSCNFCPREFSSLQTLGGHQNAHKTERALKKQPE 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00390 134 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Vifa2g00390 134 Gene3D Classic Zinc Finger 75 134 - -
Vifa2g00390 134 MobiDBLite consensus disorder prediction 1 101 - -
Vifa2g00390 134 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 2 132 IPR044246 GO:0009788
Vifa2g00390 134 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Vifa2g00390 134 MobiDBLite consensus disorder prediction 114 134 - -
Vifa2g00390 134 SUPERFAMILY beta-beta-alpha zinc fingers 98 129 IPR036236 -
Vifa2g00390 134 MobiDBLite consensus disorder prediction 19 34 - -
Vifa2g00390 134 MobiDBLite consensus disorder prediction 61 79 - -
Vifa2g00390 134 MobiDBLite consensus disorder prediction 1 18 - -
Vifa2g00390 134 MobiDBLite consensus disorder prediction 80 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00390 Vifa-Chr2 59073163 59073567 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00390 95 132 C2H2 Transcription Factor Family AT1G66140 63.158 1.13e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g00390 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00390 - - tpra:123915384 133.265