Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa2g00390 | ATGGCATCCGAATCCTCAAGCATCTCAAGCACTTCACAAGATCATGGTGATTCTTCCAAAACAAAAAACGTGGTGGACAAGAAGGAGAATGAACAAGGTCAATCTTCAAAATCCGATTCCAACGTGCTTATTGATTTTCTGAAGCTATCGAAAGAGGATTCGGTTGACAGGTCAAAGGTGCAAGAGCACAATGTTTTTAGCCCTATTCAAGTTGGTGGTTCTTCATCCGATTCACCTAATACCAATGAAAAGAAAGATGAGAAAACTACTGAAGAGAAGAATTCGGAGTCAAAGACGACTTATTCATGCAACTTTTGCCCGAGAGAATTTTCCTCTTTACAAACATTAGGAGGACACCAGAACGCCCATAAAACAGAACGTGCTTTAAAAAAACAACCCGAATAA | 405 | 0.3975 | MASESSSISSTSQDHGDSSKTKNVVDKKENEQGQSSKSDSNVLIDFLKLSKEDSVDRSKVQEHNVFSPIQVGGSSSDSPNTNEKKDEKTTEEKNSESKTTYSCNFCPREFSSLQTLGGHQNAHKTERALKKQPE | 134 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa2g00390 | 134 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 103 | 123 | IPR013087 | - | |
Vifa2g00390 | 134 | Gene3D | Classic Zinc Finger | 75 | 134 | - | - | |
Vifa2g00390 | 134 | MobiDBLite | consensus disorder prediction | 1 | 101 | - | - | |
Vifa2g00390 | 134 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 2 | 132 | IPR044246 | GO:0009788 | |
Vifa2g00390 | 134 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 101 | 128 | IPR013087 | - | |
Vifa2g00390 | 134 | MobiDBLite | consensus disorder prediction | 114 | 134 | - | - | |
Vifa2g00390 | 134 | SUPERFAMILY | beta-beta-alpha zinc fingers | 98 | 129 | IPR036236 | - | |
Vifa2g00390 | 134 | MobiDBLite | consensus disorder prediction | 19 | 34 | - | - | |
Vifa2g00390 | 134 | MobiDBLite | consensus disorder prediction | 61 | 79 | - | - | |
Vifa2g00390 | 134 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Vifa2g00390 | 134 | MobiDBLite | consensus disorder prediction | 80 | 95 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa2g00390 | Vifa-Chr2 | 59073163 | 59073567 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa2g00390 | 95 | 132 | C2H2 Transcription Factor Family | AT1G66140 | 63.158 | 1.13e-10 | 55.8 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vifa2g00390 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa2g00390 | - | - | tpra:123915384 | 133.265 |