Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00385 ATGCGAGAAATTGCAGAGGAATATTTGGAATCACCTGTTAAGAATGCAGTTGTTACGGTGCCAGCTTATTTCAATGATTCTCAACGAAAAGCCACTATAGATGCTGGCGCCATTGCTGGCCTTAATGTTATGCGAATAATCAATGAACCCACTGCTGCAGCCATTGCATATGGCCTTGACAAGAGAACTAATTGCGTAGGAGAACGCAACATTTTTGTGTTTGATCTTGGTGGTGGGACTTTTGATGTATCTCTCATTACACTCAAAGATAAGGTCCTTCGAGTTAAGGCTACGGCCGGAAACACTCACCTCGGAGGAGAGGACTTTGATAACCGAATGTTTCTAACACCAAGAGCTTTGAGGAGGTTGAGAACTGCATGCGAGAGGGCGAAAAGGGCACTAACTTTTGTATTTACCACCACTATTGAGGTAGATGCTTTATTTCAGGCCATTGACTTCTCTTCACCGATCACCCGTGCCAAGTTTGAGGAAATCAACATGGATCTTTTCATCGAGTGCATGGAGACAGTTGAGAGGTGTCTAGTTGATGCTGGGATGGACAAGAGTAGTGTAGATGATGTTGTCCTTGTTGGTGGATCTTCAAGGATTCCTAAACTGAGACAACTATTGCAGGACTTTTTTAAGGGGAAAGAACTATGCAAAAGCATCAATCCTGATGAGGCTGTTGCTTATGGGGCTGCTGTCCAGGCTGCATTCTTGACTGAAGGTGTTAGTAATGTTCCAAATTTGGAGCTGATGGATGTCACACCTCTGTCTTTAGGTTGGGGCCTAAAAAATGATGTCATGGGTGTGGTGATTCCTAGGAACACTTCGGTTCCTGTCAAGAACACACAGACATATTTTACGATTATTGATAACCAATCCATTGTTCTTATTGAGGTTTACGTGGGAGAGAGAACCAGAGCCAGTGACAACAACCTTCTTGGTTTTTTCCGTCTTTTGGGCTTACCACCTGCTCCTCGCCGCTATCCTTTTAAGGTATGCTTTGATATAGATCAAAATGGTATTCTAACTGTTTCTGCTATGGAAAAATCCACTGGCAGTACTAATGAGATTACAATAACCAACAACAAAGAAAGGTTTTCTAACGATGAAATTAAGAGAATGATCCGCGAAGCTGAGGAGTATGGCGTTGAAGATAAGAAGTTCTTAAGGAAGGCCAAAGTTATGAGTGCATTGGATGACTGTGTTTACAAAATAAGAAACGCAATGAGAAACAATGGTATTAACTTAAAGCTTTCGTCACAAGAAAACAAGAAGATCAATGCTGCAATTACCATGGCCACAAATTTGCTTGATGAGAACTACCAACAGAACGAAATTGATGTTCTTGAGTATCAATTGAGTGTTCTTGAGAGTATGTATGAACGCATTATGAAATTGTAA 1407 0.4136 MREIAEEYLESPVKNAVVTVPAYFNDSQRKATIDAGAIAGLNVMRIINEPTAAAIAYGLDKRTNCVGERNIFVFDLGGGTFDVSLITLKDKVLRVKATAGNTHLGGEDFDNRMFLTPRALRRLRTACERAKRALTFVFTTTIEVDALFQAIDFSSPITRAKFEEINMDLFIECMETVERCLVDAGMDKSSVDDVVLVGGSSRIPKLRQLLQDFFKGKELCKSINPDEAVAYGAAVQAAFLTEGVSNVPNLELMDVTPLSLGWGLKNDVMGVVIPRNTSVPVKNTQTYFTIIDNQSIVLIEVYVGERTRASDNNLLGFFRLLGLPPAPRRYPFKVCFDIDQNGILTVSAMEKSTGSTNEITITNNKERFSNDEIKRMIREAEEYGVEDKKFLRKAKVMSALDDCVYKIRNAMRNNGINLKLSSQENKKINAAITMATNLLDENYQQNEIDVLEYQLSVLESMYERIMKL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00385 468 Gene3D Actin; Chain A, domain 4 105 172 - -
Vifa2g00385 468 SUPERFAMILY Actin-like ATPase domain 1 61 IPR043129 -
Vifa2g00385 468 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 245 397 IPR029047 -
Vifa2g00385 468 PRINTS 70kDa heat shock protein signature 79 89 - -
Vifa2g00385 468 PRINTS 70kDa heat shock protein signature 329 345 - -
Vifa2g00385 468 PRINTS 70kDa heat shock protein signature 223 243 - -
Vifa2g00385 468 PRINTS 70kDa heat shock protein signature 191 207 - -
Vifa2g00385 468 PRINTS 70kDa heat shock protein signature 16 36 - -
Vifa2g00385 468 PRINTS 70kDa heat shock protein signature 249 268 - -
Vifa2g00385 468 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 246 394 IPR029047 -
Vifa2g00385 468 Gene3D - 1 238 - -
Vifa2g00385 468 Gene3D - 62 220 - -
Vifa2g00385 468 FunFam Endoplasmic reticulum chaperone BiP 1 72 - -
Vifa2g00385 468 Pfam Hsp70 protein 1 466 IPR013126 GO:0005524|GO:0140662
Vifa2g00385 468 SUPERFAMILY Actin-like ATPase domain 68 240 IPR043129 -
Vifa2g00385 468 ProSitePatterns Heat shock hsp70 proteins family signature 3. 194 208 IPR018181 -
Vifa2g00385 468 FunFam Molecular chaperone DnaK 108 173 - -
Vifa2g00385 468 PANTHER HEAT SHOCK PROTEIN 70KDA 1 432 IPR013126 GO:0005524|GO:0140662
Vifa2g00385 468 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 369 466 IPR029048 -
Vifa2g00385 468 Gene3D - 398 468 IPR029048 -
Vifa2g00385 468 FunFam Heat shock 70 kDa protein 244 397 - -
Vifa2g00385 468 ProSitePatterns Heat shock hsp70 proteins family signature 2. 73 86 IPR018181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00385 Vifa-Chr2 58725910 58731176 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00385 1 466 Calmodulin-binding Proteins AT3G12580 61.777 0.0 583