Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00363 ATGGATTCAGGTTCGCCATATCAATGGCTGAGAGAACTAAGGCGCGACTCTCAGAGCTCGAATCCGATAAGTCTTCTCATTGAGTGTGCCAAATGCGTTGCGTCGGGAAGCATAAAAAATGCAGATATAGGACTTGAGTATATTTCTCAGATTTCTTCGCCTGATGGTGATGCTGTGCAAAGAGTGGTTACTTATTTCAGTAAAGCACTTGGATACAAGATAGTCAAACAATTACCGGGTGTTTACAAAGCACTGAATTCCTCGAAAACTTCATTGTCTTCGGACGATATCCTTGTTCAGAAATACTTCTACAAATTGTGTCCGTTTTTGAAGTTTTCGTACCTGATTACAAATCAAGCAATAGTTGAAAAAATGGAATGTGAAAAGGTTGTTCATATAATTGATCTTCATTGTTCCGAACCAGCGCAATGGATAAATCTTATACAAACGTTGAAGAAGCGTCCCGGAGGTCCGCCTCATCTGAAAATTACAGGAATTCATGAAGTGAAAGAGGTACTTGACCAAATGAGTTTTCATTTAACAACTGAAGCTGGAAATTTGGATTTTCCTCTACAGTTTAATCCAATAGTTAGTAAACTCGAAGATGTAGATTTCGATAACTTGCCTGTCAAGACAGGAGATGCTGTTGCGATTACTTCTGCTCTTCAGCTGCATTCTCTCCTCGCAACCGATGATGAAATGGTTGGGAAGATCTCACCAGCAGGACCATCATCTATCAACCTGCAGAGAGCAGTGCAGATGGGTCAGAGAACTTTTGCAGATTGGCTCGAACGAGATATGATCAATGCATATATCTTGAGTCCCGATTCAGCTTTATCTCCTCTCTTTTTAGGTGCTTCACCTAAGATGGGGTTCTTTCTCAACGCTATGCGGAAGCTACAGCCGAAACTTTTAGTGATTACCGAACAGGAATCGAATCTAAATGGATGTAATTTAATGGAGAGAATCGACCGAGCATTGTATTTTTACAGTTCACTTTTCGACTGTTTGGACTCAACTGTTACGAGAACATCAGTCGAGAGACAAAAGCTCGAGAGCATGCTTCTGGGAGAGCAGATAAAGAACATCATTACTTGTGAAGGAGTTGATAGAAAGGAGAGGCATGAGAAGGTTGAGAAATGGATTAGAAGGCTAGAAATGGCTGGATTTGCAAAGGTACCTCTGAGTTACAATGGGAGGATCGAAGCCACAAATCTATTACAGCGATACAGTCATAAATACAAGTTTAAAGAAGAAAATGAATGTTTGCTTGTCTGTTGGAGTGATAGACCACTCTTTTCTGTATCAGCCTGGAGTTTTAGGAGATGA 1329 0.4063 MDSGSPYQWLRELRRDSQSSNPISLLIECAKCVASGSIKNADIGLEYISQISSPDGDAVQRVVTYFSKALGYKIVKQLPGVYKALNSSKTSLSSDDILVQKYFYKLCPFLKFSYLITNQAIVEKMECEKVVHIIDLHCSEPAQWINLIQTLKKRPGGPPHLKITGIHEVKEVLDQMSFHLTTEAGNLDFPLQFNPIVSKLEDVDFDNLPVKTGDAVAITSALQLHSLLATDDEMVGKISPAGPSSINLQRAVQMGQRTFADWLERDMINAYILSPDSALSPLFLGASPKMGFFLNAMRKLQPKLLVITEQESNLNGCNLMERIDRALYFYSSLFDCLDSTVTRTSVERQKLESMLLGEQIKNIITCEGVDRKERHEKVEKWIRRLEMAGFAKVPLSYNGRIEATNLLQRYSHKYKFKEENECLLVCWSDRPLFSVSAWSFRR 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00363 442 ProSiteProfiles GRAS family profile. 13 439 IPR005202 -
Vifa2g00363 442 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 24 435 IPR005202 -
Vifa2g00363 442 Pfam GRAS domain family 23 438 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00363 Vifa-Chr2 57730253 57731665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00363 1 442 GRAS Transcription Factor Family AT1G50420 49.111 3.16e-154 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa2g00363 GRAS 2.2e-116 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00363 - - gmx:100779726 760.37