Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00347 ATGTCAAAGAAGTCTAGCTTAGGTAGACAAAAAATTCCTATTGAAAAAATACTAAAGAAAAGTCATTTACAAGTTACTTTCTCTAAACGTCGTTCAGGACTATTCAAAAAAGTTAGTGAACTTTGTACTCTTTGTGGCGTTGAGATTGCAATTGTAGTTTTCTCTCCGGCTGACAAAGCATTTTCATTTGGTCATCCAGAAGTTGAATCTATCCTTGATCGTTATTTGACTCGCAATCCTCCACCAGAATCTAGTGCTCACCAACTTGTCGAGGCTCATAGAAATGCTAATGTCCGTGATCTCAACGTTCAATTGACTCAACTTCTTAACCATTTGGAGATCGAAAAGAAACAAGGGGAAGAGATAGAACAAGCGAGGAAAGTTAGGCAAAGCCAATTTTGGTGGGAGAGTCCAATTGATGAGCTTGCCTTGAATGAGTTGGTTCAATTAAAGGGATCTATTGAGGAGTTGAAGAAGAATATGGGAAAATTTGCTAACAAATGCATCATTGAACAATCTAATGCATCTTCATCAAACATGGGAGGAGTTAATGGATTTGGACGTTATGATTCATTTGACAACAAATTTGGGCTTGGAATCAATATTGTTCCCACTCATCCTAATGCCTATTATCTTGGTTTTAGAAATGGGTATCTTTGA 660 0.3712 MSKKSSLGRQKIPIEKILKKSHLQVTFSKRRSGLFKKVSELCTLCGVEIAIVVFSPADKAFSFGHPEVESILDRYLTRNPPPESSAHQLVEAHRNANVRDLNVQLTQLLNHLEIEKKQGEEIEQARKVRQSQFWWESPIDELALNELVQLKGSIEELKKNMGKFANKCIIEQSNASSSNMGGVNGFGRYDSFDNKFGLGINIVPTHPNAYYLGFRNGYL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00347 219 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Vifa2g00347 219 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Vifa2g00347 219 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Vifa2g00347 219 FunFam Agamous-like MADS-box protein AGL62 19 85 - -
Vifa2g00347 219 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Vifa2g00347 219 Gene3D - 19 88 IPR036879 GO:0003677|GO:0046983
Vifa2g00347 219 Coils Coil 140 167 - -
Vifa2g00347 219 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Vifa2g00347 219 Coils Coil 98 118 - -
Vifa2g00347 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Vifa2g00347 219 Gene3D - 89 180 - -
Vifa2g00347 219 PANTHER MADS BOX PROTEIN 9 162 - -
Vifa2g00347 219 SUPERFAMILY SRF-like 8 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00347 Vifa-Chr2 55671822 55672481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00347 4 159 Type I MADS-box Gene Family AT5G60440 56.604 1.18e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa2g00347 SRF-TF 2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00347 - - gmx:100793705 322.398