Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00342 ATGGGATCTAACTATGAAAATATTCATGATCTTCCAAAATGTTCACCATATGAAGCAAACAATAATGATGATGATGATGATGATGCATGTCTCTCTGCTATGCTTCTTTGTTGTGGTCCAATGATTTACACTTCAGTATTGAAAGCTTCAATTGAACTAAACTTGTTTGAGATAATATCTAAGGCAAATCCACCATGTGTTTCAGCATCTGATGTTGCTTCACGCCTACAAACAACACAGCAACATCCTCAATTGCCTCGAAGACTCGACCGAATGCTGTGTCTTCTTGCAAGCCATGGTCTTCTTGTTTGTTCCACAAGAATAAATGAAGAAGGTGGGAGTGAAAGAGTTTATGAATTGTCTTTGGCTGGTAAATACTTTGTCAATGATGACAACAATGGTTCTGTTGCTTTGTTCTCAACATTTATGAATCACCAAAAGCTTATGGATGCATTCAACAATTTTAAGGAGGTGCTATCAGATTGTGATAAAGGACTATACATGAAAGTTCATGGAATGCCTGTTTATCAAGGAATACAGTCTGATCCAGCTTGGAATCATGTGTTTAATAGGGCAATGGGTGATATTTGCACAATAGAAATGAAGAAGATATTAGAAAAATACAAAGGATTTGAAGGAATATCTTTGTTGGTTGATGTTGGAGGAGGAATTGGCCAAAGTTTGAATATGATTATATCCAAGTACCCTTCTATAAATGGCATTAACTTTGATTTGCCCCAAGTAATACAACAAGCTCCATTTTATCAAGGAATTGAACATGTTGAAGGAGACATGTTTAATAGTGTCCCAAAAGGCGATGTCATATTATTGAAGGCTATACTCCACAATTGGTCTGATGAAAACTGTCTCAAAGTTTTAAGTAAATGCTACAAAGCTTTGCCACAACATGGTAAAGTGATTGTTGTGGACTTCATAATGCCTCAAGAAATTAGGTCTACAAAAGCAGATAAAATGATTACTAGCTTTGATAATCTCATGTTTCTAGATGGTGGTGTTGAAAGAACAGAGAAAGAATTTGAAAAGTTATGCAAATGCTCTGGATTTTCTAGTTTTCATGTTGTTTGTCTTGCTTTCTCTGCTCTAGGAGTGATGGAATTTTATAAATAG 1128 0.3546 MGSNYENIHDLPKCSPYEANNNDDDDDDACLSAMLLCCGPMIYTSVLKASIELNLFEIISKANPPCVSASDVASRLQTTQQHPQLPRRLDRMLCLLASHGLLVCSTRINEEGGSERVYELSLAGKYFVNDDNNGSVALFSTFMNHQKLMDAFNNFKEVLSDCDKGLYMKVHGMPVYQGIQSDPAWNHVFNRAMGDICTIEMKKILEKYKGFEGISLLVDVGGGIGQSLNMIISKYPSINGINFDLPQVIQQAPFYQGIEHVEGDMFNSVPKGDVILLKAILHNWSDENCLKVLSKCYKALPQHGKVIVVDFIMPQEIRSTKADKMITSFDNLMFLDGGVERTEKEFEKLCKCSGFSSFHVVCLAFSALGVMEFYK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00342 375 Gene3D Vaccinia Virus protein VP39 186 363 IPR029063 -
Vifa2g00342 375 PIRSF O-mtase 13 375 IPR016461 GO:0008168
Vifa2g00342 375 Gene3D - 42 204 IPR036388 -
Vifa2g00342 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 134 373 IPR029063 -
Vifa2g00342 375 Pfam O-methyltransferase domain 161 356 IPR001077 GO:0008171
Vifa2g00342 375 SUPERFAMILY "Winged helix" DNA-binding domain 25 131 IPR036390 -
Vifa2g00342 375 FunFam Caffeic acid 3-O-methyltransferase 15 127 - -
Vifa2g00342 375 Pfam Dimerisation domain 46 97 IPR012967 GO:0046983
Vifa2g00342 375 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 35 375 IPR016461 GO:0008168
Vifa2g00342 375 PANTHER O-METHYLTRANSFERASE 44 365 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00342 Vifa-Chr2 54185705 54187981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00342 26 375 Monolignol Biosynthesis Gene Families AT5G54160 45.609 1.09e-98 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00342 - - mtr:11418328 645.966