Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00338 ATGTATTGCATCAAGAGGGGTCTTTCCCATATCGCCAAAGCTACTGACGGATTTAGCGCGGCAAATATAATAGGTCGAGGTGGATTTGGATCTGTTTACTATGCCGAGCTTCGCAACGAGAAAGCTGCAATAAAAAAGATGGATATGCAAGCATCAAAAGAATTCCTAGCCGAACTAAAGGTTCTGACACACGTTCATCACTTGAATTTGGTGCGGCTAATTGGATATTGTGTTGAGGGCTCCTTATTTTTGGTTTATGAATACATTGAGAATGGAAATCTAAGTCAACATTTGCGCGGCACAGGGAAGGATCCATTATCATGGGCAGCTAGAGTTCAAATTGCATTAGACTCAGCAAGAGGACTTGAATACATTCACGAGCATACAGTTCCTGTCTATATACATAGAGATGTTAAATCAGCAAACATTTTGATAGACAAAAACTTCCGCGGAAAGGTTGCGGATTTTGGTTTGACAAAATTGACTGAATATGGTAGCTCCTCGTTACAAACACGCCTTGTCGGGACGTTTGGATATATGCCTCCTGAGTAA 552 0.413 MYCIKRGLSHIAKATDGFSAANIIGRGGFGSVYYAELRNEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGTGKDPLSWAARVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNFRGKVADFGLTKLTEYGSSSLQTRLVGTFGYMPPE 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00338 183 Pfam Protein tyrosine and serine/threonine kinase 21 183 IPR001245 GO:0004672|GO:0006468
Vifa2g00338 183 Gene3D Transferase(Phosphotransferase) domain 1 89 183 - -
Vifa2g00338 183 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Vifa2g00338 183 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 9 183 IPR044812 GO:0019199|GO:0045087
Vifa2g00338 183 SMART serkin_6 18 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00338 183 ProSitePatterns Protein kinases ATP-binding region signature. 24 46 IPR017441 GO:0005524
Vifa2g00338 183 Gene3D Phosphorylase Kinase; domain 1 2 88 - -
Vifa2g00338 183 SUPERFAMILY Protein kinase-like (PK-like) 9 183 IPR011009 -
Vifa2g00338 183 ProSiteProfiles Protein kinase domain profile. 18 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00338 Vifa-Chr2 53708120 53709425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00338 4 183 Receptor kinase-like Gene Family AT3G21630 75.556 2.10e-95 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa2g00338 PK_Tyr_Ser-Thr 1.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00338 - K13429 gmx:100802308 331.257