Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00335 ATGGGTATGAATAAAATATTATTCTGGGATTGGGGTCTAAATTTTACGTGGTTGGTGTTTCCATGGGCTGACAAGTTGTTTGGAACTGTCTTAAGCACATACCTCACAGGTTCCTTGATTAAATTGTTTGTTCAAACACAGGAAAGGAATGGTGACGGGAAGGCTCAAGATTCAGAGCCTCCAACTCCCCATTCTGTTCTGAAAATGGGATTGAGAGATCGTAGTAGCAGCATGGAGGATCCAGATGGGACATTGGCTAGTGTTGCGCAATGCATTGAGCAGCTGCGTCAGAGCTCGTCTTCTGTGCATGAGAAAGAGTATTCCTTAAGGCAGTTATTGGATCTTATAGATATGCGTGAAAATGCATTTAGTGCTGTTGGATCTCACTCTCAGGCTGTTCCAGTGCCTGTTTCCCTTCTCCGGTCAGGTTCGTTGAATGTGAAGATCCAGGCAGCAACTGTTTTGGGATCACTTTGTAAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTTGGAGGCTGTATTCCTCCATTGCTTGGTCTCCTAAAGTCCAGTTCTACTGAAGCCCGAATTGCCGCTGCAAAGACTATATATGCTGTCTCTCAAGGTGGTGCAAAAGATCACGTTGGTTCCAAAAAATTTTCAACTGAAGGAGTAGTACCCGTGCTTTGGGAGCAGTTGCGAGCTGGCCCGAAAACCGAAAATGTAGTTGAAACTTTATTGACAGGAACATTGAAAAATCTCTCCAACAGTGTTGAGGGATTCTGGAACTCAACAGTTCAATCTGGAGGAGTGGACATATTAGTGAAGTTATTGGCAACAGGGCAGCCTAGCACTTTAGCCAGTGTTTGCTTTTTACTTGCTTCTGTAATGATGGAGGATGCATCTGTTTGTTCGAAGGTGTTGAGCGCAGAGGTGACTAAACAACTTTTGAAACTGTTAGGCCCTGGTAATGATGACCTTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTTCTCAGTGCAAAGAAGCCAGGAGAGAGATAGCCAGTTCTAATGGCATTCCTGCTCTAATCAATGCTACCATAGCTCCTTCGAAAGAATTCATGCAGGGTGAGTGTGCTCAAGCATTACAAGAGAATGCTATGTGCGCTTTAGCAAATATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTCGGTCAAAGCCTCGAGTCATGCTCTTCTCCTACACAAATTGCCGACACTTTAGGAGCAATAGCATCAGCTCTTATGATATATGATAACAAGGCCGAATCTACCAAACCGTCAGATCCTTTGGTGGTTGAAGAGACGTTACTCAAACAATTCAAACCTCATTTGCCTTTCCTTGTGCTAGAACGGACCATTGAAGCTCTAGCTAGTTTATACGGTAATTCCATACTCACAACTAAACTAGCAAATTCCGATGCAAAACGTTTGCTTGTTGGTTTGATAACAATGGCTGCCAATGAAGTGCAAGATGAGCTTATAAAAGCTCTGTTGACTCTGTGTAAAAGTGAAGGCAGTCTATGGCGTGCACTTCAGGGTCGTGAAGGAGTTCAACTATTGATATCTCTTCTCGGCCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCATTGCTTTGCCTTTTATCTAATGAAAATGATGAAAGTAAATGGGCAATTACCGCTGCCGGTGGTATACCTCCGCTTGTTCAAATTTTGGAGACAGGATCTGCAAAAGCAAAGGAAGATTCGGCTAGAATCCTTAAGAATTTGTGCAATCATAGTGAAGACATACGTGCTTGTGTTGAAAGCGCAGATGCTGTTCCTGCATTGTTGTGGCTATTGAAAAATGGAAGTCCTAATGGGAAGGATATTGCAGCAAAGACTATAAATCATTTAATTCATAAATCTGATACTACGACTATCAGTCAGCTTACAACATTATTGACTAGTGAACTTCCTGATTCTAAGGTATATATTTTGGATGCTTTGAGAAGTATGCTTTGTGTTGCTCCTCTTAGCGACATTTTACGTGAAGGTAGTGCCTCTGGTGATGCATTTGACACCGTGATAATGTTATTGAGCTCTAACAAGGAAGAGACTCAGGCAAAATCTGCTTCAGCTCTGGCTGAAATTTTCGAAGCAAGGAAAGATTTGCGTGAAAGTAGCATTGCTGTTAGAGCTCTTTGTTCAGCCATGAAGCTGCTCAATGTTGAATCCGAAAGTATCCTAATGGAGTCCTCAAACTTCCTGGCTTCAATATTTCTTTCCATCAAAGAGAACAAGGATGTAGCAGCTCTTGCTAGAGATACATTAACCACCCTAGTTACTCTAGCTAACTCTTCAGTTTTGGAAGTGGCAGAGATGGCTATAGGTGTTGTAGCGAATCTTATTTTGGATACTGAAATAGCAAAGAAAGTTGTTCTAGAAGAAGTTATCTTGCCTGCCACCAGAGTATTACGTGAAGGCACAAATTCTGGAAAAACTCGTGCTGCAGCTGCTATCGCTCGCCTCTTACATTCTCAGAAAGTTGATAATGCTGTTACTGATTGTGTGAATCGCGCCGGCACTGTTCTTGCATTAGTTTCCTTTTTGGATTCTTCTGTCAATGAATCTGTTTCCACATCAGAGGCTCTAGAAATTTGGCTATGCAAACGCCCTCTTAATATTCTATATGTTATGATATTTGGAAACAATAGGATTTGGTAA 2700 0.4207 MGMNKILFWDWGLNFTWLVFPWADKLFGTVLSTYLTGSLIKLFVQTQERNGDGKAQDSEPPTPHSVLKMGLRDRSSSMEDPDGTLASVAQCIEQLRQSSSSVHEKEYSLRQLLDLIDMRENAFSAVGSHSQAVPVPVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSTEARIAAAKTIYAVSQGGAKDHVGSKKFSTEGVVPVLWEQLRAGPKTENVVETLLTGTLKNLSNSVEGFWNSTVQSGGVDILVKLLATGQPSTLASVCFLLASVMMEDASVCSKVLSAEVTKQLLKLLGPGNDDLVRAEAAGALKSLSSQCKEARREIASSNGIPALINATIAPSKEFMQGECAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQIADTLGAIASALMIYDNKAESTKPSDPLVVEETLLKQFKPHLPFLVLERTIEALASLYGNSILTTKLANSDAKRLLVGLITMAANEVQDELIKALLTLCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAKEDSARILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTINHLIHKSDTTTISQLTTLLTSELPDSKVYILDALRSMLCVAPLSDILREGSASGDAFDTVIMLLSSNKEETQAKSASALAEIFEARKDLRESSIAVRALCSAMKLLNVESESILMESSNFLASIFLSIKENKDVAALARDTLTTLVTLANSSVLEVAEMAIGVVANLILDTEIAKKVVLEEVILPATRVLREGTNSGKTRAAAAIARLLHSQKVDNAVTDCVNRAGTVLALVSFLDSSVNESVSTSEALEIWLCKRPLNILYVMIFGNNRIW 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00335 899 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 54 878 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vifa2g00335 899 SMART arm_5 119 160 IPR000225 GO:0005515
Vifa2g00335 899 SMART arm_5 550 590 IPR000225 GO:0005515
Vifa2g00335 899 SMART arm_5 293 334 IPR000225 GO:0005515
Vifa2g00335 899 SMART arm_5 592 632 IPR000225 GO:0005515
Vifa2g00335 899 SMART arm_5 336 385 IPR000225 GO:0005515
Vifa2g00335 899 SMART arm_5 758 796 IPR000225 GO:0005515
Vifa2g00335 899 SMART arm_5 161 201 IPR000225 GO:0005515
Vifa2g00335 899 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 561 603 IPR000225 GO:0005515
Vifa2g00335 899 SUPERFAMILY ARM repeat 82 792 IPR016024 -
Vifa2g00335 899 Coils Coil 322 342 - -
Vifa2g00335 899 Gene3D - 635 878 IPR011989 -
Vifa2g00335 899 Gene3D - 469 631 IPR011989 -
Vifa2g00335 899 Gene3D - 73 442 IPR011989 -
Vifa2g00335 899 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00335 Vifa-Chr2 53377849 53386782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00335 513 641 U-box Gene Family AT2G23140 39.695 3.93e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00335 - - cam:101494820 1418.68