Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00326 ATGGAGGAAGAGAATCAAGAAGCGAAATCATTTAAGGATCTGGGCTTACCTGAGCAATTGGTGGAAGCTTGTGACAAATTGGGTTGGAAAGCACCCTTAAAGATTCAAATTGAAGCAATTCCCCTTGCACTAGAAGGAAAAGATGTGATTGGACTTGCTCAAACGGGTTCGGGTAAGACTGGGGCTTTTGCTCTTCCTATATTGCACGCACTCTTAGAAGCACCACAGCCGAACCATTTTTTTGCTTGTGTATTGTCTCCCACAAGGGAGCTTGCTATTCAAATTTCTGAACAGTTTGAAGCTTTAGGTTCTGAAATTGGTGTCAAATGTGCTGCGCTTGTTGGAGGCATTGACATGCAACAACAAAACGAAAAGCTAGGAAAGAAGCCTCATATTATTGTTGGGACTCCTGGCCGTGTCTTGGATCACCTAAAAAACACCAAAGGATTTTCTCTTGGTAAATTAAAATACTTGGTCTTAGATGAGGCAGACAGGCTGTTGAATGAGGATTTTGAAGATACACTTAACGAGATTTTAGGAATGATCCCTCGCGAGCGGAGGACATTCCTTTTTTCTGCTACAATGACAAAGAAGGTCGAGAAGCTCCAAAGGGTTTGTTTAAGAAATCCCGTGAAGATTGAAGCATCAACCAAGTATTCTACCGTGGATACACTGAAGCAACAATTCCGCTTCTTGCCAGCAAAACATAAGGATTGCTACCTTGTGTACATTCTCACTGAAATGGCCGGAAGTACATCAATGGTGTTCACTCGGACATGTGACGCCACTCGGTTACTTGCTTTGATTCTTAGAAATCTCGGTTTGAAAGCCATCCCAATTAATGGTCATATGAGTCAGCCCAAGCGACTCGGAGCCTTGAATAAGTTCAAGTCTGGGGATTGCAATATTCTTCTTTGTACTGACGTAGCTAGCAGGGGACTGGATATCCCGGCAGTGGATATGGTGATCAACTATGACATTCCCTCAAACTCCAAAGATTATATACATCGTGTGGGAAGGACTGCTCGTGCAGGACGCTCCGGGGTTGCCATTTCCCTCGTGAACCAATATGAGCTGGAATGGTTCATTCAGATAGAGAAGCTTATAGGCAAAAAGCTACCAGAGTACCCTGCACAACCGGCGGAAGTTTTGCTTTTGGAAGAGCGTGTTGGTGAAGCCAAGAGATTAGCAGCAACGAAAATGAAGGAATCTGGAGGGAAGAAGAAACGGAGGGGCAATGATTCAGGAGAAGACGAGGATATTGACAAATACTTTGGTCTCAAAGATAGAAGAAAATCGTCTATTAAGAAGTTTAGAAGATAA 1323 0.4339 MEEENQEAKSFKDLGLPEQLVEACDKLGWKAPLKIQIEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALLEAPQPNHFFACVLSPTRELAIQISEQFEALGSEIGVKCAALVGGIDMQQQNEKLGKKPHIIVGTPGRVLDHLKNTKGFSLGKLKYLVLDEADRLLNEDFEDTLNEILGMIPRERRTFLFSATMTKKVEKLQRVCLRNPVKIEASTKYSTVDTLKQQFRFLPAKHKDCYLVYILTEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWFIQIEKLIGKKLPEYPAQPAEVLLLEERVGEAKRLAATKMKESGGKKKRRGNDSGEDEDIDKYFGLKDRRKSSIKKFRR 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00326 440 Pfam Helicase conserved C-terminal domain 240 345 IPR001650 -
Vifa2g00326 440 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 213 IPR014001 -
Vifa2g00326 440 SMART helicmild6 264 345 IPR001650 -
Vifa2g00326 440 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 159 167 IPR000629 -
Vifa2g00326 440 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Vifa2g00326 440 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 240 384 IPR001650 -
Vifa2g00326 440 CDD SF2_C_DEAD 225 354 - -
Vifa2g00326 440 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 5 396 - -
Vifa2g00326 440 Pfam DEAD/DEAH box helicase 34 202 IPR011545 GO:0003676|GO:0005524
Vifa2g00326 440 Gene3D - 219 390 IPR027417 -
Vifa2g00326 440 MobiDBLite consensus disorder prediction 397 423 - -
Vifa2g00326 440 CDD DEADc_DDX47 10 214 IPR044765 GO:0005524
Vifa2g00326 440 Gene3D - 1 218 IPR027417 -
Vifa2g00326 440 SMART ultradead3 28 228 IPR014001 -
Vifa2g00326 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 366 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00326 Vifa-Chr2 51753805 51758908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00326 10 384 Eukaryotic Initiation Factors Gene Family AT3G19760 31.926 1.72e-65 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00326 K14777 - gmx:100775796 761.525