LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g00321	ATGGCACTACCTTCTTCTTGTGATTGGACTCATGATGTCTTTCTAAGCTTTAGAGGCACTGATACACGAAACAACTTTACTGGTAATCTCTTCAATTCTCTCCATCAAAGAGGTATAAACACTTTCTTTGATGAACACAAAATTCATAAAGGAGATGAAATCACACCTACTCTTCTCCAAGCCATTGAACACTCCAGAATTTTCATTGCTGTTTTCTCCAATGACTACGCATCTTCAACTTTCTGTTTGACTGAACTTGTCACCATTCTTGAGTCCGCCAAGTCACATGAAAGGTTGTTTTTTCCTATTTTTTATGATGTGGATCCTTCCCACATTCGACACCTAACTGGAACTTATGGTGAAGCTTTAGAAAGACACGAAAAGAGGTTTATAAATGACAAGGATAAGGTGCAGAAATGGAGGGATGCTTTGCGTCAAGCTGCTAATGTTTCCAGATGCCATTTCAAACCAGGGTCTGAATCAGAATATAAGTTTATTGGGAAGATAGTTGATGAGATCTCTATAAAAATCAACCGTGTTCATTTGCATGTTGCAAGCAAACCTGTTGGGTTGGAGTCTCAAATGTTAAAAGTTAAATCTCTCCTTGAATCTAATGAGAGAGTCAGCATGGTAGGCATTTATGGAATTGGCGGAATAGGAAAATCAACGCTTGCTCGTGCTGTGCATAACTTGGTTGCCGATCAATTTGAAAGTGTGTGTTTTCTTGCTGACATAAGACAGCAGGAAGCTCAACATGGTCTTACCCACCTCCAAGAAACACTACTGTCTGAAATACTCGGAGAGAAGGATATTAAAGTGGGAGATGTTTATAGAGGAATGTCAATAATTAAAAGGAGGCTTAAAAGAAAAAAAGTCCTTTTGATTCTTGATAATATTGACAGAGAGAAGCAGTTACAGGTACTCGTAGGCGAACATGATTGGTTTGGCTTCGGCAGCAAGATCGTAATCACTTCAAGAGACAAGCATTTGCTGGCCACTCATGGGATTGTGAAAGTGTATGAGGTCAAACAGCTAAACAAAGAAAATGCTCTTGAATTATTTAGTTGGCATGCATTTAAAATTAAAAAAATGAATTCAAGTTATGCGGATACTGCAAAACGTGCAGTATCTTATTGTCAAGGTCTTCCCTTGGCTTTGGAGGTGATAGGTTCTCAATTGTTTGGAAAAAGTTTAGGTGTATGGAAATCCTCATTAGATATGTATGAAAAAGTCATTCATAAAGACATCCATGACATTCTGAAAGTTAGCTATGATGATTTGGAAGAAGATATAAAGGATGAGCTTATTGACAAATCCCTCATGAAAATTGATAACAATGGTTGTGTGGGAATGCATGACTTGATTCAAGACATGGGCAGAAAAATTGTGAGGCAGGAATCAACATTGGAGCCTGGACGTCGCAGTAGATTATGGTTTAGTGATGACATTGTTCATGTTTTGGAAGAAAACAAGGGAACCGATTCAATAGAAGTCATAATATGCGACTTGCACAAATACAAAATAGTGAAATGGTGTGGAAAAGCCTTCGGCCAAATGAAGAACTTGAAAATCCTTATAATTAGAAGTGGACGATTTTCCCAAAGTCCTCAAATTCTTCCAAATAGCTTGAAAGTGCTTGATTGGAGTGGATATCAATCATCCTCTTTGCCATCTGATTTTAATCCCAAGAATCTTGCAATACTTAACCTTCCTGAAAGTTGCCTTAAACATTTTGTATCATTCAAGAGCTTTGAGATGTTGAACTTTATAGATTTTGAAGGCTGCAAGTTCCTAACTGAGATACCTAGTTTATCTAGAGTACCAAATTTAGGGGCACTATGTGTCGATTATTGCACAAATTTAATTAGAATTCATGAATCAGTTGGGTTTCTTGAGAGGCTTGTGTTATTAAGTGCTCAAGGATGCACTCAATTAGAATGTCTGGTTCCTTTCATCAACTTGCCATCTTTAGAGACTTTAGATCTTAGAGGTTGCTCACGTCTTGAAAGGTTCCCTGAAGTAGTTGCAGTAATGGAGAATATAAAAGACGTTTATTTAGATCAGACTGCCATAAAAGAATTGCCTTTTACATTTAGAAAACTTGTTGGACTGCAACGTTTGTTCTTGAGGGGATGCCATAGAATGATCCGGCTACCAAGCTATATATCTGCGAAATGTGAGATAATTACAGCTTATGGTTGTAGAGGATTTCGATCATTCGACGATGAAGAAAAAGTAAGCCCAAAAGTGTTTGAAGATGCCATGCGTGTTCGTAATGAATATGGATGGTTTTACCTTGATATGTATTCTTGTTACCCAACCTCCAACGATGTCATTGAAGTATGTATGCCTCTGCGTGATTATGAATTTGGGTTTTTAGATGTGAGCCAAAATCTTACGGTTAAAAAGAACGAATCATCTTTGTGGTTTTGGTTTAGAAAAAAATTCCCCAGGATATGTCTAATGTGTTTTGTACAAAGTGATAAGTATTTGGACAACATGATATTCATTTTCAAGTTGAAAGTACTCATCAATGGCACTGAACAATTCACTTCCCAATGTAAATACATATTTCATACAGAAAAAGTGACAGTACAATGTTTTATGTGTGATGTACATTGCAAAGTGGGGGGTGTATTTTCTGGGAATGAGTGGAATAAGGTGGAGATTTTATGTGAATTGAAAACTCTCACGCCATATGATTTGGAAAGGGTGATGGCATATCAGATTGGGACCACTACGAGTACTGCAACTTGGGATTTCAGGTTAGAAAACATAGGGCATGATTTGAGTTATATTGACAATCCTGATTCTCCTATGTCAACTGAAATAAGGTTAAATATTGATTCCCCCCTTATTGGATAA	2865	0.3724	MALPSSCDWTHDVFLSFRGTDTRNNFTGNLFNSLHQRGINTFFDEHKIHKGDEITPTLLQAIEHSRIFIAVFSNDYASSTFCLTELVTILESAKSHERLFFPIFYDVDPSHIRHLTGTYGEALERHEKRFINDKDKVQKWRDALRQAANVSRCHFKPGSESEYKFIGKIVDEISIKINRVHLHVASKPVGLESQMLKVKSLLESNERVSMVGIYGIGGIGKSTLARAVHNLVADQFESVCFLADIRQQEAQHGLTHLQETLLSEILGEKDIKVGDVYRGMSIIKRRLKRKKVLLILDNIDREKQLQVLVGEHDWFGFGSKIVITSRDKHLLATHGIVKVYEVKQLNKENALELFSWHAFKIKKMNSSYADTAKRAVSYCQGLPLALEVIGSQLFGKSLGVWKSSLDMYEKVIHKDIHDILKVSYDDLEEDIKDELIDKSLMKIDNNGCVGMHDLIQDMGRKIVRQESTLEPGRRSRLWFSDDIVHVLEENKGTDSIEVIICDLHKYKIVKWCGKAFGQMKNLKILIIRSGRFSQSPQILPNSLKVLDWSGYQSSSLPSDFNPKNLAILNLPESCLKHFVSFKSFEMLNFIDFEGCKFLTEIPSLSRVPNLGALCVDYCTNLIRIHESVGFLERLVLLSAQGCTQLECLVPFINLPSLETLDLRGCSRLERFPEVVAVMENIKDVYLDQTAIKELPFTFRKLVGLQRLFLRGCHRMIRLPSYISAKCEIITAYGCRGFRSFDDEEKVSPKVFEDAMRVRNEYGWFYLDMYSCYPTSNDVIEVCMPLRDYEFGFLDVSQNLTVKKNESSLWFWFRKKFPRICLMCFVQSDKYLDNMIFIFKLKVLINGTEQFTSQCKYIFHTEKVTVQCFMCDVHCKVGGVFSGNEWNKVEILCELKTLTPYDLERVMAYQIGTTTSTATWDFRLENIGHDLSYIDNPDSPMSTEIRLNIDSPLIG	954

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g00321	954	FunFam	Disease resistance protein (TIR-NBS-LRR class)	7	179	-	-
	Vifa2g00321	954	SUPERFAMILY	L domain-like	499	772	-	-
	Vifa2g00321	954	Pfam	NB-ARC domain	196	409	IPR002182	GO:0043531
	Vifa2g00321	954	SUPERFAMILY	"Winged helix" DNA-binding domain	415	488	IPR036390	-
	Vifa2g00321	954	SMART	AAA_5	207	345	IPR003593	GO:0016887
	Vifa2g00321	954	SUPERFAMILY	Toll/Interleukin receptor TIR domain	5	150	IPR035897	-
	Vifa2g00321	954	Gene3D	-	5	183	IPR035897	-
	Vifa2g00321	954	Gene3D	-	344	435	IPR042197	-
	Vifa2g00321	954	SMART	till_3	10	150	IPR000157	GO:0007165
	Vifa2g00321	954	PRINTS	Disease resistance protein signature	210	225	-	-
	Vifa2g00321	954	PRINTS	Disease resistance protein signature	286	300	-	-
	Vifa2g00321	954	PRINTS	Disease resistance protein signature	379	393	-	-
	Vifa2g00321	954	PRINTS	Disease resistance protein signature	652	668	-	-
	Vifa2g00321	954	ProSiteProfiles	TIR domain profile.	9	177	IPR000157	GO:0007165
	Vifa2g00321	954	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	177	435	IPR027417	-
	Vifa2g00321	954	Pfam	TIR domain	11	176	IPR000157	GO:0007165
	Vifa2g00321	954	Gene3D	Ribonuclease Inhibitor	485	751	IPR032675	-
	Vifa2g00321	954	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	11	728	IPR044974	GO:0006952
	Vifa2g00321	954	Gene3D	-	184	339	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g00321	Vifa-Chr2	51294747	51298128	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g00321	11	745	WRKY Transcription Factor Family	AT4G12020	30.341	6.83e-81	286

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g00321	-		-	mtr:11415136	1286.55