LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g00320	ATGGCAGTACCTTCTTCTTGTGATTGGACTCATGATGTCTTTCTAAGCTTTAGAGGCACTGATACCCGAAACACTTTTACTGGTAATCTCTTCAATTCTCTCCAACAAAGAGGTATAAACACTTTCTTTGATGAAGACACAATTCATGAAGGAGATGAAATCACACCTACTCTTCTCCAAGCCATTGAACACTCCAGAATTTTCATTGCTGTTTTCTCCAAAGACTACGCATCTTCGACTTTCTGTTTGAATGAGCTTGTCACTATTCTTGAGTGCGCCAAGCCACCACCTGGAAGGTTGTTTATTCCTATTTTTTATGATGTGGATCCTTCCCACATTCGATACCTAACTGGAACTTATGGTAAAGCTTTCAAAAAACACGAAAAGAGGTTTAGAAATGACAAGGATAAGGTGCAGAAATGGAGGAATGCTTTGCTTCAAGCCGCTAATGTTGCCGGATGCCATTTCAAACCAGGGTCTGAATCAGAATATAAGTTTATTAGAAAGATAGTTGATAAGATCTCTATAGAAATCAACCGTGTTCATTTGAATGTTGCAAGCAAACCTGTTGGGTTGAAGTCTCAAATGTTAAAAGTTAAATCTCTCCTTGAATCTAATGAGAGAGTCATCATGGTAGGCATATATGGAATTGGCGGAATAGGAAAATCAACACTTGCTCGTGCTGTGCATAACTTGGTTGCTGATCAATTTGAAGGTGTGTGTTATCTTGCTGACATAAGACAGAAGACAACTAATGACGATCTTGCACACCTCCAAGAAACACTACTTTCTGAAATACTCGGGGAGAAGGATATTAAAGTGGTAGATGTTCACAAAGGAATTTCAATGATTAAAAGGAGGCTCCAAAGAAAGAAAGTCCTTTTGATTCTTGACAATATTGAAAAAGACAAGCAGTTACAGGTACTTGTAGGAGGACATGATTGGTTTGGCTCCGGCAGCAAGATCATAATCACTACAAGAAACAAGCATTTGCTGGCCACTCATGGGATTGTGAAAGTGTATGAGGTCCAACAGCTAAACAAAGAAAAGGCTCTTGAATTATTTAGTTGTCATGCATTTAAACATGGAAAACTGGATCCAAGTTATGTGGATACTGCAAAACGTGCAGTATCTTATTGTCATGGTCTTCCCTTGGCTTTGGAGGTGATAGGTTCTCAATTGTTTGGAAAAAGTTTAGCTGTATGGAAATCTTCATTAGATATATATGATGGAGTCATTTGTAAAGACATCCATGACATTCTGAAAGTTAGCTATGATGTTTTGGAAGAAAATGAAAAGGGTATTTTTCTAGACATAGCTTGTTTCTTTAATTCTTATGAAATAGGCTATGTCAAAGAAATACTATACTTACATGGTTTTCATGCTGAAAATGGTATAAAAGATCTTACTGACAAATCTCTCATGAAAATTGATATCAATGGTTGTGTGAGAATGCATGACTTGATTCAAGACATGGGCAGAGCAATTGTGAGGCAGGAATCAACATTGGAGCCTGGACGTCGCAGTAGATTATGGTTTAGTGATGACATTCTTCATGTTTTGGAAGAAAACAAGGGAACTGATTCAATAGAAGTCATAATTGCTGACTTGCGCAAAGACAGAAAAGTGAAATGGTGTGGAAAAGCCTTCGGACAAATGAAGAACTTGAAAGTTCTTATAATTAGAAATGGAGTTTTTTCCCAAAGTCCTCAAATTCTTCCAAGTAGTTTGAAAGTGCTTGATTGGAGTGGATATCAATCCTCCTCTTTACCTTTCGATTTTAATCCCAAGAATCTTGCAATACTCAACCTGCCTGAAAGCTACCTTAAACAGTTTGAATCATTCAAGGTGTTTGAGATGTTGAACTTTCTAGATTTTGAAGCCTGCAAGTACCTAACCGAAATACCTAGCTTATCTAGATTACCCAAGTTGGGGGCACTGTGTGTCGATTATTGCACAAATTTAGTTAGAATTCATGACTCAGTTGGCTATCTTGAGAGGCTTGTTTTATTAAGTGCTCAAGGATGCACCCAATTAGAAATTCTGGTTCCTTGTATCAACTTGCCATCTTTAGAGACTTTAGATCTTAGAGGTTGCTCATGTCTTGAAAGGTTCCCGGAAGTAGTTGGAGTAATGGAGAATATAAAAGATGTTTATTTAGACCAGACTGCCATAAAACAATTGCCTTTTACATTTGAAAATCTCGTTGGACTCCAACGTTTGTTCTTGAGGGGATGCCAAAGGATGATCCAGCTACCAAGCTACATATTTCCCAAATGTGAGATAATTACATCTTATGGTTGTAGAGGATTTCGATCATTCAACAGTGAAGAAAAAGTGCGCCCAAAAGTGTTTGTAGATGCTATGCTTGTTCACAATGAAGGTGGATGGTCCTACCTTAATATGTATTCTCGTTATACAACCTCCAATGATGTCCTAGAAGTGTGTACTCCTCTATGTGAAACCAATTTTTCTAGATTTAGGGATAAAGAGGGGAGTGCAAGTAATAAATCATCACTGTCTTTTTGGTTCCGGAATAATTTCCCTAGGATAGCTCTAATGTGTCAAGTAGAATCTGAAAAGCATTTGGACAACATGGTGTTGAATTTCGAGTTGAATGTACTCATCAATGGGACTAAACAACTTACTTCCTCATGTGAATACATATTTTATACTGAAAAAGTGACAACACAAACTCTTAACTTTGATGTAATATGCAAAGTGGAGGGTGTATTTTCAGAGAATGAGTGGAATCTGGTAGAGATTTTGTGTGAGTTCAAACGCCTCATACCATGTGATTTTGAAGGGGGGATGGCCTATCGAGATTGGACCACTAATAGGATTGTGAAGTGGGTTTTCTTGATAGAAAACAAAGGGGATGATTTGAGTTACGTTGACAATCCTAATTCTCCTATGTCAACCGAAGAGAAATTTCTAGAGATAGAAGAAATAAAGGAAAGATTACTCGTCTTGACAATCCTGATTCTCCTATGTCAACAACTCAAGAGAGTTTCAAGAGATATAAGAAATAAATGA	3036	0.3745	MAVPSSCDWTHDVFLSFRGTDTRNTFTGNLFNSLQQRGINTFFDEDTIHEGDEITPTLLQAIEHSRIFIAVFSKDYASSTFCLNELVTILECAKPPPGRLFIPIFYDVDPSHIRYLTGTYGKAFKKHEKRFRNDKDKVQKWRNALLQAANVAGCHFKPGSESEYKFIRKIVDKISIEINRVHLNVASKPVGLKSQMLKVKSLLESNERVIMVGIYGIGGIGKSTLARAVHNLVADQFEGVCYLADIRQKTTNDDLAHLQETLLSEILGEKDIKVVDVHKGISMIKRRLQRKKVLLILDNIEKDKQLQVLVGGHDWFGSGSKIIITTRNKHLLATHGIVKVYEVQQLNKEKALELFSCHAFKHGKLDPSYVDTAKRAVSYCHGLPLALEVIGSQLFGKSLAVWKSSLDIYDGVICKDIHDILKVSYDVLEENEKGIFLDIACFFNSYEIGYVKEILYLHGFHAENGIKDLTDKSLMKIDINGCVRMHDLIQDMGRAIVRQESTLEPGRRSRLWFSDDILHVLEENKGTDSIEVIIADLRKDRKVKWCGKAFGQMKNLKVLIIRNGVFSQSPQILPSSLKVLDWSGYQSSSLPFDFNPKNLAILNLPESYLKQFESFKVFEMLNFLDFEACKYLTEIPSLSRLPKLGALCVDYCTNLVRIHDSVGYLERLVLLSAQGCTQLEILVPCINLPSLETLDLRGCSCLERFPEVVGVMENIKDVYLDQTAIKQLPFTFENLVGLQRLFLRGCQRMIQLPSYIFPKCEIITSYGCRGFRSFNSEEKVRPKVFVDAMLVHNEGGWSYLNMYSRYTTSNDVLEVCTPLCETNFSRFRDKEGSASNKSSLSFWFRNNFPRIALMCQVESEKHLDNMVLNFELNVLINGTKQLTSSCEYIFYTEKVTTQTLNFDVICKVEGVFSENEWNLVEILCEFKRLIPCDFEGGMAYRDWTTNRIVKWVFLIENKGDDLSYVDNPNSPMSTEEKFLEIEEIKERLLVLTILILLCQQLKRVSRDIRNK	1011

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g00320	1011	FunFam	Disease resistance protein (TIR-NBS-LRR class)	7	180	-	-
	Vifa2g00320	1011	Pfam	NB-ARC domain	200	397	IPR002182	GO:0043531
	Vifa2g00320	1011	SUPERFAMILY	L domain-like	534	829	-	-
	Vifa2g00320	1011	SMART	till_3	10	151	IPR000157	GO:0007165
	Vifa2g00320	1011	Gene3D	-	5	184	IPR035897	-
	Vifa2g00320	1011	ProSiteProfiles	TIR domain profile.	9	178	IPR000157	GO:0007165
	Vifa2g00320	1011	SUPERFAMILY	"Winged helix" DNA-binding domain	416	522	IPR036390	-
	Vifa2g00320	1011	PRINTS	Disease resistance protein signature	686	702	-	-
	Vifa2g00320	1011	PRINTS	Disease resistance protein signature	211	226	-	-
	Vifa2g00320	1011	PRINTS	Disease resistance protein signature	287	301	-	-
	Vifa2g00320	1011	PRINTS	Disease resistance protein signature	380	394	-	-
	Vifa2g00320	1011	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	11	766	IPR044974	GO:0006952
	Vifa2g00320	1011	SUPERFAMILY	Toll/Interleukin receptor TIR domain	5	153	IPR035897	-
	Vifa2g00320	1011	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	182	439	IPR027417	-
	Vifa2g00320	1011	Pfam	TIR domain	11	180	IPR000157	GO:0007165
	Vifa2g00320	1011	Gene3D	-	345	429	IPR042197	-
	Vifa2g00320	1011	Gene3D	Ribonuclease Inhibitor	521	794	IPR032675	-
	Vifa2g00320	1011	Gene3D	-	185	340	IPR027417	-
	Vifa2g00320	1011	Coils	Coil	1010	1011	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g00320	Vifa-Chr2	51224202	51227754	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g00320	11	787	WRKY Transcription Factor Family	AT4G12020	32.306	2.16e-87	306

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g00320	-		-	mtr:11415136	1389.79