Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00318 ATGGAGTACCATAATAAGGTGCTAATGATATGTACTTTCTTCTTTTTCTCCATGCCCATTTTCTCTAAACAGAGCGCATTTACTACTATTGCTCCAAACCAGTTTATCCAATATAGTGATACACTTGTTTCTGCAGCTCGAACCTTTGAAGCAGGATTTTTCAACTTTGGAGATCCACAACGCCAATACTTTGGTATATGGTACAAAAACTTATCACCTAGGACTATTGTGTGGGTTGCCAATAGAGACACCCCTGTACAAAACTCAACTGGATTGCTGAAACTCAATGATCAGGGAAATCTTGTTATTCTTGATGGCTCCAAAGGCGTTGTCTGGTCCTCCAATTTATCGAGAAATGTGGTGAAACCAGTTCTTGTATTGTTGGATTCTGGAAACCTTGTTGTGAAAGATGCAAACAGCAACAGTGAGAATGAGGATTTGTTTTGGGAAAGTTTTGATTATCCCGGTAACACTTTCCTTCCTGGAATGAAGCTGAAAAGTAATTTAGTTACTGGCCCATATAAATATCTCACATCTTGGAGAAGCCCTGAAGATCCTGCTGAAGGTGAGTGTTCATATAGGATAGATACACATGGTTTACCTCAATTGGTTAGTGCAAAGGGAGCAAGATTTCTATATAGAGGAGGTTCATGGAATGGATTTCTTTTCAATGGTGTTCCTTGGCAAAGATTGCATAGAATCTTGAATTTCTCAATAGTGTTCACCAACAAAGAATTCTCTTATCAATATGAAACTATGAACAATTCAATTATTACAAGATCGGTGCTAGATCCTTACGGAAACTATCAGCGTCTTCTTTGGTCAAATAAGTCACAAATTTGGGAGGCTATAGCTAATGGTCCTGCGGACCAGTGTGATAATTATGCCTTGTGTGGTATCAACTCTAACTGCAATATTAATGACTTTCCAATATGTGAATGCTTGGAAGGTTTCATGCCAAAATTTCAACCGAAGTGGGAGTCATCAAACTGGTCTGATGGGTGTGTAAGGAAAACACATTTAAACTGTCTCCGTGGAGATGGATTTTTGAAATACACGAACATGAAGTTGCCAGATACGTCATCATCGTGGTTTGACAAGAGCATGAGCCTTGAGGAATGCAACACTGCGTGTTTGAAAAACTGTTCTTGCACTGCATATGCAAATTTGGATATAAGATATGGTGGTAGTGGCTGCATACTTTGGTTTGACAACATTGTGGACATGAGAATACATCCAGACCAAGGACAAGACATTTATATACGACTCGCATCTTCAGAGTTTGATTATAAAAAGAAAAAGAGGAACTTGAAGCGTGCTAAAACTCTTGCAGGAGTTATTGCATTCATTGCAGGGCTTATCGTTATTATATTGGTCATATTAACGTCTAGAAAAAAGCTTGGATGTAAAAAAAAATTATTTCACAAGAAGAAGAAGGAAGATGGTGACTTGAAAACAATATTTGATTTTTCAACCATAATTAATGCAACAAACCACTTCTCTAGCAGAAACAAGTTAGGAGAAGGTGGTTTTGGGCCGGTGTACAAGGGCATCATGGTAGATGGCCAAGAGATTGCTGTTAAGAGACTATCTAAAACATCATGTCAAGGAACTGAGGAGTTCAAAAATGAAGTACAGTTGATGGCAACACTTCAACACCGCAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGATGAAAAGTTATTGATCTACGAATTCATGCCTAATAGAAGCTTGGATCACTTTATTTTTGAGTCTACGCAAAGTAAATTAATAGGTTGGACTAAGCGTTTGGAAATTATTGATGGGATTGCTCGGGGGCTGCTGTATCTCCACCAAGATTCTACACTAAGAATCATACATAGAGATCTCAAGACAAGCAATATTCTTCTTGATATTGATATGATCCCAAAAATATCGGATTTTGGTTTAGCCAGATCATTTATGGGAGACCAAGCCGAGGCTAAAACAAATAGAGTGATGGGAACATATGGATATATGCCTCCAGAATATGCAGTGCGTGGATCTTTCTCAATAAAATCTGATGTTTTTAGTTTTGGAGTTGTTGTACTTGAGATAATTAGCGGTAAGAAGAATAGCAGATTTTGTGACTCTCGACATCATTTAAACCTTCTTGGGCATGCATGGAAACTATGGATTGAAGAAAGGCCACAGGAGTTGATAGCTGATATATTATATGATGAGGCCATATGTTCAGAAATAATAAGATTTATTCATGTGGGTTTATTGTGTGTACAACAGAAACCAGAAAATAGGCCTAACATGTCATCTGTGGTTTATATGTTAAAGGGTGAAAAGTCACTCCCCAAACCAAGTGAACCCGGGTTTTATGCAGGAAAAGATAATACAAATAACACAGGCTCTTCTTTACAGGTACTTTCAATAAACGAAGGTTCGATCTCATTGTTAGAGGGCCGGTAG 2448 0.3791 MEYHNKVLMICTFFFFSMPIFSKQSAFTTIAPNQFIQYSDTLVSAARTFEAGFFNFGDPQRQYFGIWYKNLSPRTIVWVANRDTPVQNSTGLLKLNDQGNLVILDGSKGVVWSSNLSRNVVKPVLVLLDSGNLVVKDANSNSENEDLFWESFDYPGNTFLPGMKLKSNLVTGPYKYLTSWRSPEDPAEGECSYRIDTHGLPQLVSAKGARFLYRGGSWNGFLFNGVPWQRLHRILNFSIVFTNKEFSYQYETMNNSIITRSVLDPYGNYQRLLWSNKSQIWEAIANGPADQCDNYALCGINSNCNINDFPICECLEGFMPKFQPKWESSNWSDGCVRKTHLNCLRGDGFLKYTNMKLPDTSSSWFDKSMSLEECNTACLKNCSCTAYANLDIRYGGSGCILWFDNIVDMRIHPDQGQDIYIRLASSEFDYKKKKRNLKRAKTLAGVIAFIAGLIVIILVILTSRKKLGCKKKLFHKKKKEDGDLKTIFDFSTIINATNHFSSRNKLGEGGFGPVYKGIMVDGQEIAVKRLSKTSCQGTEEFKNEVQLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDHFIFESTQSKLIGWTKRLEIIDGIARGLLYLHQDSTLRIIHRDLKTSNILLDIDMIPKISDFGLARSFMGDQAEAKTNRVMGTYGYMPPEYAVRGSFSIKSDVFSFGVVVLEIISGKKNSRFCDSRHHLNLLGHAWKLWIEERPQELIADILYDEAICSEIIRFIHVGLLCVQQKPENRPNMSSVVYMLKGEKSLPKPSEPGFYAGKDNTNNTGSSLQVLSINEGSISLLEGR 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00318 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Vifa2g00318 815 Pfam PAN-like domain 343 409 IPR003609 -
Vifa2g00318 815 ProSiteProfiles Protein kinase domain profile. 500 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00318 815 Pfam Protein tyrosine and serine/threonine kinase 503 769 IPR001245 GO:0004672|GO:0006468
Vifa2g00318 815 ProSiteProfiles Bulb-type lectin domain profile. 27 148 IPR001480 -
Vifa2g00318 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 152 - -
Vifa2g00318 815 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 762 - -
Vifa2g00318 815 Gene3D Phosphorylase Kinase; domain 1 473 575 - -
Vifa2g00318 815 SMART serkin_6 500 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00318 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 342 423 - -
Vifa2g00318 815 Gene3D Transferase(Phosphotransferase) domain 1 576 781 - -
Vifa2g00318 815 SMART blect_4 33 155 IPR001480 -
Vifa2g00318 815 Pfam S-locus glycoprotein domain 213 322 IPR000858 GO:0048544
Vifa2g00318 815 CDD PAN_AP_plant 339 424 - -
Vifa2g00318 815 ProSiteProfiles PAN/Apple domain profile. 343 424 IPR003609 -
Vifa2g00318 815 PIRSF SRK 1 815 IPR024171 GO:0004674
Vifa2g00318 815 SUPERFAMILY Protein kinase-like (PK-like) 485 771 IPR011009 -
Vifa2g00318 815 CDD STKc_IRAK 506 773 - -
Vifa2g00318 815 Gene3D Hepatocyte Growth Factor 340 426 - -
Vifa2g00318 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 186 IPR036426 -
Vifa2g00318 815 Pfam D-mannose binding lectin 75 181 IPR001480 -
Vifa2g00318 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 576 779 - -
Vifa2g00318 815 Gene3D - 22 152 IPR036426 -
Vifa2g00318 815 SMART ntp_6 344 423 IPR003609 -
Vifa2g00318 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 464 575 - -
Vifa2g00318 815 CDD B_lectin 41 155 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00318 Vifa-Chr2 51176613 51180064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00318 471 815 Receptor kinase-like Gene Family AT4G23150 50.279 5.98e-114 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa2g00318 PK_Tyr_Ser-Thr 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00318 - - tpra:123915365 1271.53