Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00314 ATGCCCACTTTTTCTAAACAGAATACCTTTAATACTATTGCTCTAAACCAATTTATCCAGTATAGTGATACACTTGTTTCTGCAGCTGGAATTTTTGAAGCAGGATTTTTCAACTTTGGAGATCCACAACGTCAATACTTTTGTATATGGTACAAAAACTTATCACCCAGGACTATTGTGTGGGTTGCCAATAGAGACACCCCTGTACAAAACTCTACAGGGTTGCTGAAACTCAATGATCAGGGAAATCTTGTTATTCTTGATGACTCGAAAGGCGTTGTTTGGTCCTCTAATTCATCAAGAATTGTGGCGAAACCAGTTGTTGTACAATTGTTGGATTCAGGAAACCTTGTTGTGAAAGACGCAAACAGCAGCGGTGAGAATAAGGATTTCTTGTGGGAGAGTTTTGATTATCCTGGTAACACTTTCCTTGCTGGAATGAAGCTGAAAAGTAATTTAGTTACTGGTCCGTATAAATATCTCACATCTTGGAGAAGCCCTGAAGATCCTGCTGAAGGCGAGTTTACAAAAATGATAGATACACATGGTTTACCTCAATTGGTTAATTCCAAGGGAGCGAGATTTCTATATAGAGAAGGTTCGTGGAATGGATTTCTTTTCACTGGTGTTCCTTGGCAAAGACTGCGCGGAGTCTTGAATTTCTCAGTAGTGTTCAAAGACAAAGAATTCTCTTATCAATATGAAACTAGGAACATTTCAACTATTACTAGATTGGTGCTAGATCCATCTGGAAATTCACAGCGTCTTCTTTGGTCAAATAAGTCACAAATTTGGGAGGCTATAGTTAGTGATCCTGAAGACCAGTGTGATGATTATGCCTTGTGTGGTATTAACTCTAACTGCAATATTAATGACTTTCCAATATGTGAATGCTTGGAAGGTTTCACGCCAAAATTTCAATCAAAGTGGGAGTCATTAAACTGGTCCGGTGGGTGTGTAAGGAAAACACATTTAAATTGTCTCCATGGAGATGGATTTTTTATGTACACAAATATGAAGTTGCCAGATACGTCATCATCGTGGTTTGACAAGAGCCTGAGCCTTGAGGAATGCAAGATTGGCTGTTTGAAAAACTGTTCTTGCACTGCATATGCAAATTTGGATATAAGATATGGTGGTAGTGGCTGCATACTTTGGTTTGACAACATTGTGGACATGAGAATACATCCATACCAAGGACAAGACATTTACATACGACTCGCATCTTCAGAGTTTGACCATAAAAAGAAAAAGAGGAACTTGAAGCGTGCTGGAACTCTTGCAGGAGTTATTGCATTCATTATAGGACTTACCGTTATTATATTGGTCACATTAACGTCTAGAAAGAAGCTTGGATGTATAAAAAATTTATTTCACAAGAAGGAGAAGGAAGATGGTGACTTGAAAACAATATTTGATTTTCCAACCATCGATAATGCAACAAACCACTTCTCTAGCAGAAACAAGTTAGGAGAAGGTGGTTTTGGGCCGGTGTACAAGGGCATCATGGTAGATGGCCAAGAGATTGCTGTTAAGAGGCTATCTAAAACATCAGGTCAAGGAACTGAGGAGTTCATAAATGAAGTACAGTTGATGGCAACACTTCAACACCGCAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGATGAAAAGTTATTGATCTACGAATTCATGCCCAACAGAAGCTTGGATCATTTTATTTTTGATACTACGCAAAGTAAGTCAATAGATTGGACTAAGCGTTTGGAAATTATTGATGGGATTGCTCGGGAGCTGCTGTATCTCCACCAAGATTCTACACTAAGAATCATACATAAAGATCTCAAGACAAGCAATATTCTTCTTGATATTGATATGATCCCAAAGATATCAGATTTTGGTTTAGCCAGATCATTTATGGGAGATCAAGCCGAGGCTAATACAAATAGAGTGATGGGAACATATGGATATATGCCTCCAGAATATGCAGTGCGTGGATCTTTTTCAATAAAATCGGATGTTTTTAGCTTTGGAGTTGTTGTACTTGAGATAATTAGCGGTAAGAAGAATAGCAGATTTTGTGACCCTCAACATCATTTAAACCTTCTTGGGCATGCATGGAGACTATGGATTGAAGATAGGCCACTGGAGTTGATGGATGAAATATTATATGATGCTGCCATATGTTCAGAAATAATAAAATGTATTCATGTGGCTCTATTGTGTGTACAAGAGAAACCAGAAAATAGGCCTAACATGTCGTCTGTGGTTTTTATGTTAAAGGGTGGAAAGTTGCTCCCCAAACCAAGTAAACCCGGGTTCTATGCAGGAAGAGATAATACTAGCACAGAATCTTCTTCAAAGGAGGGTTCAGTAAATGAAGCTTCAATCTCATTGTTAGAGGCTAGATAG 2397 0.3826 MPTFSKQNTFNTIALNQFIQYSDTLVSAAGIFEAGFFNFGDPQRQYFCIWYKNLSPRTIVWVANRDTPVQNSTGLLKLNDQGNLVILDDSKGVVWSSNSSRIVAKPVVVQLLDSGNLVVKDANSSGENKDFLWESFDYPGNTFLAGMKLKSNLVTGPYKYLTSWRSPEDPAEGEFTKMIDTHGLPQLVNSKGARFLYREGSWNGFLFTGVPWQRLRGVLNFSVVFKDKEFSYQYETRNISTITRLVLDPSGNSQRLLWSNKSQIWEAIVSDPEDQCDDYALCGINSNCNINDFPICECLEGFTPKFQSKWESLNWSGGCVRKTHLNCLHGDGFFMYTNMKLPDTSSSWFDKSLSLEECKIGCLKNCSCTAYANLDIRYGGSGCILWFDNIVDMRIHPYQGQDIYIRLASSEFDHKKKKRNLKRAGTLAGVIAFIIGLTVIILVTLTSRKKLGCIKNLFHKKEKEDGDLKTIFDFPTIDNATNHFSSRNKLGEGGFGPVYKGIMVDGQEIAVKRLSKTSGQGTEEFINEVQLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDHFIFDTTQSKSIDWTKRLEIIDGIARELLYLHQDSTLRIIHKDLKTSNILLDIDMIPKISDFGLARSFMGDQAEANTNRVMGTYGYMPPEYAVRGSFSIKSDVFSFGVVVLEIISGKKNSRFCDPQHHLNLLGHAWRLWIEDRPLELMDEILYDAAICSEIIKCIHVALLCVQEKPENRPNMSSVVFMLKGGKLLPKPSKPGFYAGRDNTSTESSSKEGSVNEASISLLEAR 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00314 798 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 6 136 - -
Vifa2g00314 798 CDD STKc_IRAK 490 757 - -
Vifa2g00314 798 Pfam PAN-like domain 327 393 IPR003609 -
Vifa2g00314 798 CDD B_lectin 24 139 IPR001480 -
Vifa2g00314 798 Pfam D-mannose binding lectin 58 165 IPR001480 -
Vifa2g00314 798 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 326 407 - -
Vifa2g00314 798 Gene3D Transferase(Phosphotransferase) domain 1 560 761 - -
Vifa2g00314 798 SMART serkin_6 484 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00314 798 MobiDBLite consensus disorder prediction 771 789 - -
Vifa2g00314 798 Pfam Protein tyrosine and serine/threonine kinase 487 752 IPR001245 GO:0004672|GO:0006468
Vifa2g00314 798 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 746 - -
Vifa2g00314 798 SMART ntp_6 328 407 IPR003609 -
Vifa2g00314 798 MobiDBLite consensus disorder prediction 762 798 - -
Vifa2g00314 798 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 170 IPR036426 -
Vifa2g00314 798 Gene3D Hepatocyte Growth Factor 324 405 - -
Vifa2g00314 798 ProSiteProfiles PAN/Apple domain profile. 327 408 IPR003609 -
Vifa2g00314 798 ProSiteProfiles Protein kinase domain profile. 484 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00314 798 ProSiteProfiles Bulb-type lectin domain profile. 10 132 IPR001480 -
Vifa2g00314 798 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 449 559 - -
Vifa2g00314 798 Gene3D Phosphorylase Kinase; domain 1 457 559 - -
Vifa2g00314 798 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 560 762 - -
Vifa2g00314 798 SMART blect_4 16 139 IPR001480 -
Vifa2g00314 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Vifa2g00314 798 PIRSF SRK 1 798 IPR024171 GO:0004674
Vifa2g00314 798 Gene3D - 5 136 IPR036426 -
Vifa2g00314 798 CDD PAN_AP_plant 323 408 - -
Vifa2g00314 798 SUPERFAMILY Protein kinase-like (PK-like) 470 755 IPR011009 -
Vifa2g00314 798 Pfam S-locus glycoprotein domain 197 306 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00314 Vifa-Chr2 51150263 51153448 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00314 430 769 Receptor kinase-like Gene Family AT4G23230 53.043 7.39e-120 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa2g00314 PK_Tyr_Ser-Thr 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00314 - - tpra:123915365 1266.91