Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00313 ATGCCCACTTTTTCTAAACAGAATACCTTTAATACTATTGCTCTAAACCAATTTATCCAGTATAGTGATACACTTGTTTCTGCAGCTGGAATTTTTGAAGCAGGATTTTTCAACTTTGGAGATCCACAACGTCAATACTTTTGTATATGGTACAAAAACTTATCACCCAGGACTATTGTGTGGGTTGCCAATAGAGACACCCCTGTACAAAACTCTACAGGGTTGCTGAAACTCAATGATCAGGGAAATCTTGTTATTCTTGATGACTCGAAAGGCGTTGTTTGGTCCTCTAATTCATCAAGAATTGTGGCGAAACCAGTTGTTGTACAATTGTTGGATTCAGGAAACCTTGTTGTGAAAGACGCAAACAGCAGCGGTGAGAATAAGGATTTCTTGTGGGAGAGTTTTGATTATCCTGGTAACACTTTCCTTGCTGGAATGAAGCTGAAAAGTAATTTAGTTACTGGTCCGTATAAATATCTCACATCTTGGAGAAGCCCTGAAGATCCTGCTGAAGGCGAGTTTACAAAAATGATAGATACACATGGTTTACCTCAATTGGTTAATTCCAAGGGAGCGAGATTTCTATATAGAGAAGGTTCGTGGAATGGATTTCTTTTCACTGGTGTTCCTTGGCAAAGACTGCGCGGAGTCTTGAATTTCTCAGTAGTGTTCAAAGACAAAGAATTCTCTTATCAATATGAAACTAGGAACATTTCAACTATTACTAGATTGGTGCTAGATCCATCTGGAAATTCACAGCGTCTTCTTTGGTCAAATAAGTCACAAATTTGGGAGGCTATAGTTAGTGATCCTGAAGACCAGTGTGATGATTATGCCTTGTGTGGTATTAACTCTAACTGCAATATTAATGACTTTCCAATATGTGAATGCTTGGAAGGTTTCACGCCAAAATTTCAATCAAAGTGGGAGTCATTAAACTGGTCCGGTGGGTGTGTAAGGAAAACACATTTAAATTGTCTCCATGGAGATGGATTTTTTATGTACACAAATATGAAGTTGCCAGATACGTCATCATCGTGGTTTGACAAGAGCCTGAGCCTTGAGGAATGCAAGATTGGCTGTTTGAAAAACTGTTCTTGCACTGCATATGCAAATTTGGATATAAGATATGGTGGTAGTGGCTGCATACTTTGGTTTGACAACATTGTGGACATGAGAATACATCCATACCAAGGACAAGACATTTACATACGACTCGCATCTTCAGAGTTTGACCATAAAAAGAAAAAGAGGAACTTGAAGCGTGCTGGAACTCTTGCAGGAGTTATTGCATTCATTATAGGACTTACCGTTATTATATTGGTCACATTAACGTCTAGAAAGAAGCTTGGTAAGCCAGGATGTATAAAAAATTTATTTCACAAGAAGGAGAAGGAAGATGGTGACTTGAAAACAATATTTGATTTTCCAACCATCGATAATGCAACAAACCACTTCTCTAGCAGAAACAAGTTAGGAGAAGGTGGTTTTGGGCCGGTGTACAAGGGCATCATGGTAGATGGCCAAGAGATTGCTGTTAAGAGGCTATCTAAAACATCAGGTCAAGGAACTGAGGAGTTCATAAATGAAGTACAGTTGATGGCAACACTTCAACACCGCAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGATGAAAAGTTATTGATCTACGAATTCATGCCCAACAGAAGCTTGGATCATTTTATTTTTGATACTACGCAAAGTAAGTCAATAGATTGGACTAAGCGTTTGGAAATTATTGATGGGATTGCTCGGGAGCTGCTGTATCTCCACCAAGATTCTACACTAAGAATCATACATAAAGATCTCAAGACAAGCAATATTCTTCTTGATATTGATATGATCCCAAAGATATCAGATTTTGGTTTAGCCAGATCATTTATGGGAGATCAAGCCGAGGCTAATACAAATAGAGTGATGGGAACATATGGATATATGCCTCCAGAATATGCAGTGCGTGGATCTTTTTCAATAAAATCGGATGTTTTTAGCTTTGGAGTTGTTGTACTTGAGATAATTAGCGGTAAGAAGAATAGCAGATTTTGTGACCCTCAACATCATTTAAACCTTCTTGGGCATGCATGGAGACTATGGATTGAAGATAGGCCACTGGAGTTGATGGATGAAATATTATATGATGCTGCCATATGTTCAGAAATAATAAAATGTATTCATGTGGCTCTATTGTGTGTACAAGAGAAACCAGAAAATAGGCCTAACATGTCGTCTGTGGTTTTTATGTTAAAGGGTGGAAAGTTGCTCCCCAAACCAAGTAAACCCGGGTTCTATGCAGGAAGAGATAATACTAGCACAGAATCTTCTTCAAAGGAGGGTTCAGTAAATGAAGCTTCAATCTCATTGTTAGAGGCTAGATAG 2406 0.3832 MPTFSKQNTFNTIALNQFIQYSDTLVSAAGIFEAGFFNFGDPQRQYFCIWYKNLSPRTIVWVANRDTPVQNSTGLLKLNDQGNLVILDDSKGVVWSSNSSRIVAKPVVVQLLDSGNLVVKDANSSGENKDFLWESFDYPGNTFLAGMKLKSNLVTGPYKYLTSWRSPEDPAEGEFTKMIDTHGLPQLVNSKGARFLYREGSWNGFLFTGVPWQRLRGVLNFSVVFKDKEFSYQYETRNISTITRLVLDPSGNSQRLLWSNKSQIWEAIVSDPEDQCDDYALCGINSNCNINDFPICECLEGFTPKFQSKWESLNWSGGCVRKTHLNCLHGDGFFMYTNMKLPDTSSSWFDKSLSLEECKIGCLKNCSCTAYANLDIRYGGSGCILWFDNIVDMRIHPYQGQDIYIRLASSEFDHKKKKRNLKRAGTLAGVIAFIIGLTVIILVTLTSRKKLGKPGCIKNLFHKKEKEDGDLKTIFDFPTIDNATNHFSSRNKLGEGGFGPVYKGIMVDGQEIAVKRLSKTSGQGTEEFINEVQLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDHFIFDTTQSKSIDWTKRLEIIDGIARELLYLHQDSTLRIIHKDLKTSNILLDIDMIPKISDFGLARSFMGDQAEANTNRVMGTYGYMPPEYAVRGSFSIKSDVFSFGVVVLEIISGKKNSRFCDPQHHLNLLGHAWRLWIEDRPLELMDEILYDAAICSEIIKCIHVALLCVQEKPENRPNMSSVVFMLKGGKLLPKPSKPGFYAGRDNTSTESSSKEGSVNEASISLLEAR 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00313 801 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 6 136 - -
Vifa2g00313 801 Pfam PAN-like domain 327 393 IPR003609 -
Vifa2g00313 801 CDD B_lectin 24 139 IPR001480 -
Vifa2g00313 801 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 326 407 - -
Vifa2g00313 801 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 563 765 - -
Vifa2g00313 801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Vifa2g00313 801 SMART serkin_6 487 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00313 801 SMART ntp_6 328 407 IPR003609 -
Vifa2g00313 801 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 170 IPR036426 -
Vifa2g00313 801 Gene3D Transferase(Phosphotransferase) domain 1 563 764 - -
Vifa2g00313 801 PIRSF SRK 1 801 IPR024171 GO:0004674
Vifa2g00313 801 ProSiteProfiles PAN/Apple domain profile. 327 408 IPR003609 -
Vifa2g00313 801 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 749 - -
Vifa2g00313 801 Pfam Protein tyrosine and serine/threonine kinase 490 755 IPR001245 GO:0004672|GO:0006468
Vifa2g00313 801 Gene3D Hepatocyte Growth Factor 324 405 - -
Vifa2g00313 801 CDD STKc_IRAK 493 760 - -
Vifa2g00313 801 Pfam S-locus glycoprotein domain 197 306 IPR000858 GO:0048544
Vifa2g00313 801 MobiDBLite consensus disorder prediction 774 792 - -
Vifa2g00313 801 ProSiteProfiles Bulb-type lectin domain profile. 10 132 IPR001480 -
Vifa2g00313 801 SMART blect_4 16 139 IPR001480 -
Vifa2g00313 801 ProSiteProfiles Protein kinase domain profile. 487 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00313 801 Gene3D Phosphorylase Kinase; domain 1 460 562 - -
Vifa2g00313 801 Pfam D-mannose binding lectin 58 165 IPR001480 -
Vifa2g00313 801 Gene3D - 5 136 IPR036426 -
Vifa2g00313 801 CDD PAN_AP_plant 323 408 - -
Vifa2g00313 801 MobiDBLite consensus disorder prediction 765 801 - -
Vifa2g00313 801 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 456 562 - -
Vifa2g00313 801 SUPERFAMILY Protein kinase-like (PK-like) 473 758 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00313 Vifa-Chr2 51150263 51153448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00313 475 801 Receptor kinase-like Gene Family AT4G11530 55.786 6.65e-119 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa2g00313 PK_Tyr_Ser-Thr 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00313 - - tpra:123915365 1270.37