Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00312 ATGGGAACATATGGATATATGCCTCCAGAGTATGCAGTGCATGGATCTTTCTCGATAAAATCGGATGTTTTTAGCTTTGGAGTTGTGGTACTTGAGATAATTAGCAGGAGGAAGAATCGCGGATTTTGTGACCCTATACATCATCTGAACCTTCTTGGTCATGCATGGAGGCTATGGATTGAAGATAGGCCACTGGAGTTAATGGATGAAACATTATATGATATGCACATGGTTAGGGATAAATTAGCTTTAGATAGGAAGACTTTCAGTGGTTCTGTCGCCTATGAATATGGACTCTATCGTGGACCATTCGTCTGGGAAGGAACTCTCATCGCTGGAGCTAGGGTTTACCTCGGTGGTCGGGCGCCTAATATGTTAGAGGCAGTGTTAGCTGAAGATTTCGATATTTGA 411 0.4282 MGTYGYMPPEYAVHGSFSIKSDVFSFGVVVLEIISRRKNRGFCDPIHHLNLLGHAWRLWIEDRPLELMDETLYDMHMVRDKLALDRKTFSGSVAYEYGLYRGPFVWEGTLIAGARVYLGGRAPNMLEAVLAEDFDI 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00312 136 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 73 - -
Vifa2g00312 136 Gene3D Transferase(Phosphotransferase) domain 1 1 90 - -
Vifa2g00312 136 ProSiteProfiles Protein kinase domain profile. 1 136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00312 136 Pfam Protein tyrosine and serine/threonine kinase 5 37 IPR001245 GO:0004672|GO:0006468
Vifa2g00312 136 SUPERFAMILY Protein kinase-like (PK-like) 1 95 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00312 Vifa-Chr2 51135191 51141211 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00312 1 72 Receptor kinase-like Gene Family AT4G05200 54.167 1.49e-24 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa2g00312 PK_Tyr_Ser-Thr 4.3e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00312 - - tpra:123915364 144.05