Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00310 ATGGAGAACAATCATAAGGTGTTAATGCTAATCTTCTTTTGCTCTATTATGCCTAGTTTCTCTGAACAGAACACTCTTGTTCCTAATCAGTTTATCCGATATCGTGAAACCATTGTTTCTGCAGGCGGAACCTTTGAAGCAGGATTTTCCAATTTTGGAGATCCGCAACGCCAATACTTTGGTATATGGTACAAAAACTTATCACCTAGGACTATTGTGTGGGTTGCCAATAGAGACACCCCTGTACAAAACTCAACTGGATTGCTGAAACTCAATGATCAAGGAAATCTTGTTATTCTTGATGACTCGAAAGGCCTTGTGTGGTCCTCCAATTCATCGAGAATCGTGGCGAAACCAGTTGTTGTACAATTGTTGGATTCAGGAAACCTTGTTGTGAAAGATGCAAACAGCAGCGGTGAGAATAAGGATTTCTTGTGGGAGAGTTTTGATTATCCTGGTAACACTTTCCTTGCTGGAATGAAGCTGAAAAGTAATTTAATTACTGGTCCGTATAGATATCTCACATCTTGGAGAAGCCCTGAAGATCCTGCTGAAGGTGAGTGTTCATATAGGATAGATTCACATGGTTTTCCTCAACTGGTTACTGTCAAGGGGGGAAGGTTTCTGTATAGAATAGGGTCATGGGATGGATTTCTCTTCACAGGCGTTTCCTGGCATTGGCATAGATTGCAAAGTCTCTTTAATTTCTCAGTAGTTTTCACCGACAAAGAATTCTCTTATCAATATGAAACTAGCAACAGTTCAACTTTTACTAGATTGGTGCTAGATTCTTATGGAAATACACAACGTCTTACATGGTCAGATAGGACCCAAATTTGGGAGGCTATATCTTCTCGTCCTACAGACCAGTGTGATAATTATGCCTTGTGTGGTATCAACTCTAACTGCAATATTAATGACTTTCCGATATGTGAATGCTTGGAAGATGGATTTTTGAAGTACATAAACATAAAGTTGCCTGATACGTCATCGTCCTGGTTTGACACGAGCTTGAGCCTCGAGGAATGCAAGACTGTGTGTTTGAAAAACTGTTCTTGCACTGCATATGCAAATTTGGATATCAGATACGGTGGTAGTGGCTGCATACTTTGGTTTGACAACATTGTGGACATGAGAATACATCCAGACCAAGGACAAGACATTTACATACGACTCGCATCTTCAGAATTTGATCATATAAAGAATAAGAGGAGCTTGAAGCGTGTTGGAACTCTTGTCGGAGTTATTGCATTTATCATAGGACTTATCGTTATTATTTTGGTTATATCAGCATCTAAGAAGAAACTTGGAAAAATAAAAAAGTTATTTCACAAGAAGAGGAAGGAGGATGGTGACTTGGCAACACTATTTGATTTTTCAACCATCACTAAAGCAACAGATCACTTCTCTAACAGAAACAAGTTAGGAGAAGGTGGTTTTGGACCAGTGTACAAGGGCATATTGGTAGATGGGCAAGAGATTGCTGTTAAGAGGCTATCTGAAACATCAGGACAAGGTACTGAGGAGTTCAAAAATGAAGTAAAATTGATGGCAACACTTCAACACCGAAATCTTGTAAAACTTCTTGGTTGCTCTATTCAACATGATGAAAAGTTGTTGATCTACGAGTTCATGCCCAACAGAAGCTTGGATTACTTTATTTTTGATTCTACGCGAAGTAAATTACTAGGTTGGACAAAGCGCTTGGAAATTATTGATGGGATTGCTCGGGGGCTGCTGTATCTTCATCAGGATTCTACGCTTAGAATCATACATAGAGACCTCAAAACCAGCAATATTCTTCTTGATATTGATATGATCCCAAAGATATCAGATTTTGGTTTAGCCAGATCATTTATGGGAGACCAAGCCGAGGCTAATACAAATAGAGTGATGGGAACATATGGATATATGCCTCCAGAATATGCAGTGCATGGATCTTTCTCAATAAAATCGGATGTTTTTAGCTTTGGAGTTGTAGTACTTGAGATAATTAGCAATAAGAAGAATCGTGGATTTTGTGACCCTCTACATGATCTAAACCTTCTTGGTCATGCATGGAGACTATGGATTGAAGATAGGCCACTGGAGTTGATGGATGAAATATTATATGATGCAGCCATATGTTCAGAAATAATAAAATGTATTCATGTGGCTCTATTGTGTGTACAAGAGAAACCAGAAAATAGGCCTAACATGTCATCTGTGGTTTTTATGTTAAAGGGTGGAAAGTTACTCCCCAAACCAAGTAAACCCGGGTTCTATGCAGGAAGAGATAATACAAATAGTACAGGATCTTCTTCAAAGGGGTGTTCAATAAACGAAGCATCGATCTCGGTGTTAGAGGCCCGATAG 2355 0.3907 MENNHKVLMLIFFCSIMPSFSEQNTLVPNQFIRYRETIVSAGGTFEAGFSNFGDPQRQYFGIWYKNLSPRTIVWVANRDTPVQNSTGLLKLNDQGNLVILDDSKGLVWSSNSSRIVAKPVVVQLLDSGNLVVKDANSSGENKDFLWESFDYPGNTFLAGMKLKSNLITGPYRYLTSWRSPEDPAEGECSYRIDSHGFPQLVTVKGGRFLYRIGSWDGFLFTGVSWHWHRLQSLFNFSVVFTDKEFSYQYETSNSSTFTRLVLDSYGNTQRLTWSDRTQIWEAISSRPTDQCDNYALCGINSNCNINDFPICECLEDGFLKYINIKLPDTSSSWFDTSLSLEECKTVCLKNCSCTAYANLDIRYGGSGCILWFDNIVDMRIHPDQGQDIYIRLASSEFDHIKNKRSLKRVGTLVGVIAFIIGLIVIILVISASKKKLGKIKKLFHKKRKEDGDLATLFDFSTITKATDHFSNRNKLGEGGFGPVYKGILVDGQEIAVKRLSETSGQGTEEFKNEVKLMATLQHRNLVKLLGCSIQHDEKLLIYEFMPNRSLDYFIFDSTRSKLLGWTKRLEIIDGIARGLLYLHQDSTLRIIHRDLKTSNILLDIDMIPKISDFGLARSFMGDQAEANTNRVMGTYGYMPPEYAVHGSFSIKSDVFSFGVVVLEIISNKKNRGFCDPLHDLNLLGHAWRLWIEDRPLELMDEILYDAAICSEIIKCIHVALLCVQEKPENRPNMSSVVFMLKGGKLLPKPSKPGFYAGRDNTNSTGSSSKGCSINEASISVLEAR 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00310 784 Gene3D Transferase(Phosphotransferase) domain 1 545 746 - -
Vifa2g00310 784 SMART blect_4 29 152 IPR001480 -
Vifa2g00310 784 CDD B_lectin 36 152 IPR001480 -
Vifa2g00310 784 Pfam PAN-like domain 313 378 IPR003609 -
Vifa2g00310 784 Gene3D - 19 149 IPR036426 -
Vifa2g00310 784 Pfam S-locus glycoprotein domain 210 318 IPR000858 GO:0048544
Vifa2g00310 784 Pfam D-mannose binding lectin 71 178 IPR001480 -
Vifa2g00310 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 590 602 IPR008271 GO:0004672|GO:0006468
Vifa2g00310 784 ProSiteProfiles Protein kinase domain profile. 469 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00310 784 SMART ntp_6 313 392 IPR003609 -
Vifa2g00310 784 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 311 392 - -
Vifa2g00310 784 ProSiteProfiles PAN/Apple domain profile. 313 393 IPR003609 -
Vifa2g00310 784 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 545 747 - -
Vifa2g00310 784 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 432 544 - -
Vifa2g00310 784 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 731 - -
Vifa2g00310 784 SMART serkin_6 469 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00310 784 PIRSF SRK 314 784 IPR024171 GO:0004674
Vifa2g00310 784 PIRSF SRK 3 317 IPR024171 GO:0004674
Vifa2g00310 784 CDD PAN_AP_plant 300 393 - -
Vifa2g00310 784 SUPERFAMILY Protein kinase-like (PK-like) 454 740 IPR011009 -
Vifa2g00310 784 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 149 - -
Vifa2g00310 784 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 183 IPR036426 -
Vifa2g00310 784 Gene3D Phosphorylase Kinase; domain 1 442 544 - -
Vifa2g00310 784 Pfam Protein tyrosine and serine/threonine kinase 472 737 IPR001245 GO:0004672|GO:0006468
Vifa2g00310 784 CDD STKc_IRAK 475 742 - -
Vifa2g00310 784 Gene3D Hepatocyte Growth Factor 310 395 - -
Vifa2g00310 784 ProSiteProfiles Bulb-type lectin domain profile. 23 145 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00310 Vifa-Chr2 50939339 50943006 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00310 413 754 Receptor kinase-like Gene Family AT4G23230 54.155 9.56e-123 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa2g00310 PK_Tyr_Ser-Thr 7.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00310 - - tpra:123915365 1204.89