Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00309 ATGGAGAACAGACATGAGCTGGAACCTTTGAAGCAGGATTTTTCAACTTTGGAGATCCACAACGTCAATACTTTGGTATATGACCAAGGACAAGACATTTACATACGACTCGCATCTTCAGAGTTTGATCATAAAAAGAATAAGAGGAACTTGAAGCGTGCTCGGACTTTTGCAGGAGTTATTGCATTCATTATAGGACTAACCATTATTGTATTGATCACATCAGCATATATAAAGAAGCTCGGATGCATAAAAATGTTATTTCACAAGAAGGAAAAGGAAGATGCTGATTTGGCAACAATATTTGATTTTTCGACAATTGCTAATGCAACAAATCACTTCTCTAACAGAAACAAGTTAGGAGAAGGTGGTTTTGGACCAGTGTACCAGGGCATAATGGTAGATGGCCAAGAGATTGCTGTTAAGAGGCTTTCTAAAACATCGGGACAAGGAACTGAGGAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAACACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATACAACAAGATGAAAAGTTATTGATCTACGAATTCATGCCCAATAGAAGCTTGGATTACTTTATTTTTGATACTACGCGAAGTAAATTACTAGATTGGAGAAAGCGCTTGGAAATTATCGATGGGATTGCTCGGGGGCTGCTATCATTTATGGGAGATCAAGCCGAGGCTAATACAAATAGAGTGATGGGAACATACGGATACATGTCTCCGGAATATGCAGTGCATGGATCTTTTTCAATAAAGTCTGATGTTTTCAGCTTTGGAGTCGTTGTACTTGAGATAATTAGCGGTAAGAAGAATAGTGGGTTTGGTGACCCTCGACATCGTCTAAACCTTCTTGGGCATGCATGGAGACTATGGATTGAAGAAAGAAGAATATCTTCATTAGCCATAGGTTGGTCTGCATCCTTTGCCATATCCTGTTCAACTTCATTAGCAGCAGGCTCTATTTCATTGACAGCTTCATTGGCAACAAGATAA 1014 0.3886 MENRHELEPLKQDFSTLEIHNVNTLVYDQGQDIYIRLASSEFDHKKNKRNLKRARTFAGVIAFIIGLTIIVLITSAYIKKLGCIKMLFHKKEKEDADLATIFDFSTIANATNHFSNRNKLGEGGFGPVYQGIMVDGQEIAVKRLSKTSGQGTEEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFDTTRSKLLDWRKRLEIIDGIARGLLSFMGDQAEANTNRVMGTYGYMSPEYAVHGSFSIKSDVFSFGVVVLEIISGKKNSGFGDPRHRLNLLGHAWRLWIEERRISSLAIGWSASFAISCSTSLAAGSISLTASLATR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00309 337 ProSiteProfiles Protein kinase domain profile. 114 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g00309 337 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 28 230 - -
Vifa2g00309 337 Gene3D Phosphorylase Kinase; domain 1 87 189 - -
Vifa2g00309 337 SUPERFAMILY Protein kinase-like (PK-like) 101 301 IPR011009 -
Vifa2g00309 337 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 80 189 - -
Vifa2g00309 337 Pfam Protein tyrosine and serine/threonine kinase 234 277 IPR001245 GO:0004672|GO:0006468
Vifa2g00309 337 Pfam Protein tyrosine and serine/threonine kinase 117 224 IPR001245 GO:0004672|GO:0006468
Vifa2g00309 337 Gene3D Transferase(Phosphotransferase) domain 1 223 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00309 Vifa-Chr2 50923615 50927424 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00309 93 298 Receptor kinase-like Gene Family AT3G45860 52.209 8.20e-78 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa2g00309 PK_Tyr_Ser-Thr 1.1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00309 - - tpra:123915365 461.455